Gene Information gene info

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GENE：DEPP1

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol DEPP1
FullNmae DEPP autophagy regulator 1
LocusType gene with protein product
Status Approved
HGNC_id HGNC:23355
EnsembleID ENSG00000165507
Uniprot Q9NTK1

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
DEPP1 autophagy 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature
DEPP1 autophagy 36341760 The PCD-related genes contained the key regulatory genes of twelve PCD patterns which is mentioned above. Genes were collected from GSEA gene sets, KEGG, review articles, and manual collation [10]. The ultimate gene list was the concatenation regulatory genes of twelve PCD patterns. regulator signature

Go Annotation:

GeneSymbol Go id
DEPP1 GO:0005737,GO:0005739,GO:0005739,GO:0005777,GO:0006914,GO:0010506,GO:0010506,GO:0043231

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
HIF1A DEPP1 19828020 trascriptional regulation,stimulation chromatin immunoprecipitation array TFlink
PRDM14 DEPP1 18971253 20953172 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
SMARCA4 DEPP1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF DEPP1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
EGR1 DEPP1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
HNF4A DEPP1 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS0000237AF9 DEPP1 18185580 25416803 mrna cleavage,inhibition array technology TarBase
URS000003575B DEPP1 19536157 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS00001067D1 DEPP1 19536157 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS000004BACE DEPP1 19536157 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS000047944F DEPP1 19536157 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS00000011DF DEPP1 19536157 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS0000224AEA DEPP1 19536157 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS000003E1A9 DEPP1 19536157 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS00000CF1D2 DEPP1 19536157 25416803 mrna cleavage,inhibition clip TarBase

Source Target Pmid Interactiontype Methods Database
KRT19 DEPP1 14525934 16189514 24234451 25348397 physical association two hybrid,physical interaction,two hybrid pooling approach,two hybrid fragment pooling approach,two hybrid ComPPI,HPRD,IntAct
CCDC85B DEPP1 14525934 16189514 24234451 25348397 physical association two hybrid,physical interaction,two hybrid pooling approach,two hybrid fragment pooling approach,two hybrid ComPPI,HPRD,IntAct
PLSCR1 DEPP1 14525934 16189514 24234451 25348397 physical association two hybrid,physical interaction,two hybrid pooling approach,two hybrid fragment pooling approach,two hybrid ComPPI,HPRD,IntAct
TRIM23 DEPP1 19060904 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array,two hybrid pooling approach ComPPI,IntAct
MYCBP DEPP1 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation ComPPI,IntAct
QKI DEPP1 14525934 16713569 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array,two hybrid ComPPI,HPRD,IntAct
USHBP1 DEPP1 14525934 16189514 24234451 25348397 physical association two hybrid,physical interaction,two hybrid pooling approach,two hybrid fragment pooling approach,two hybrid ComPPI,HPRD,IntAct
KRT15 DEPP1 14525934 16189514 24234451 25348397 physical association two hybrid,physical interaction,two hybrid pooling approach,two hybrid fragment pooling approach,two hybrid ComPPI,HPRD,IntAct

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