Gene Information gene info

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GENE：RETREG3

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol RETREG3
FullNmae reticulophagy regulator family member 3
LocusType gene with protein product
Status Approved
HGNC_id HGNC:27258
EnsembleID ENSG00000141699
Uniprot Q86VR2

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
RETREG3 autophagy 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature
RETREG3 autophagy 36341760 The PCD-related genes contained the key regulatory genes of twelve PCD patterns which is mentioned above. Genes were collected from GSEA gene sets, KEGG, review articles, and manual collation [10]. The ultimate gene list was the concatenation regulatory genes of twelve PCD patterns. regulator signature

Go Annotation:

GeneSymbol Go id
RETREG3 GO:0005515,GO:0005789,GO:0010976,GO:0030574,GO:0032991,GO:0061709,GO:0071782,GO:0071786,GO:0140506

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
GATA1 RETREG3 19941826 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
GATA2 RETREG3 19941826 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
SMARCA4 RETREG3 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF RETREG3 18971253 trascriptional regulation,stimulation inferred by curator TFlink
E2F1 RETREG3 18971253 trascriptional regulation,stimulation inferred by curator TFlink
E2F4 RETREG3 18971253 trascriptional regulation,stimulation inferred by curator TFlink
HIF1A RETREG3 18971253 trascriptional regulation,stimulation inferred by curator TFlink
MITF RETREG3 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS0000122ED0 RETREG3 19088304 25416803 mrna cleavage,inhibition array technology TarBase
URS00002152A8 RETREG3 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS0000001EB3 RETREG3 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS000036AFF1 RETREG3 23592263 25416803 mrna cleavage,inhibition clip TarBase
URS000055128B RETREG3 23592263 25416803 mrna cleavage,inhibition clip TarBase
URS000075994C RETREG3 23592263 25416803 mrna cleavage,inhibition clip TarBase
URS0000486E0B RETREG3 25416803 27292025 mrna cleavage,inhibition clip TarBase
URS00005CCD18 RETREG3 25416803 27292025 mrna cleavage,inhibition clip TarBase
URS00004BC299 RETREG3 25416803 27292025 mrna cleavage,inhibition clip TarBase
URS000075CC78 RETREG3 25416803 27292025 mrna cleavage,inhibition clip TarBase
URS000075D814 RETREG3 25416803 27292025 mrna cleavage,inhibition clip TarBase
URS00001012BC RETREG3 25416803 27292025 mrna cleavage,inhibition clip TarBase
URS00003AD2AA RETREG3 25416803 27292025 mrna cleavage,inhibition clip TarBase

Source Target Pmid Interactiontype Methods Database
ARPC3 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
TMEM11 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
ATP5F1B RETREG3 25348397 N/A physical interaction ComPPI
MAP1LC3B RETREG3 24234451 25348397 26040720 physical association pull down,physical interaction ComPPI,IntAct
STAP1 RETREG3 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
ATP6V0C RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
RABAC1 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
KTN1 RETREG3 25348397 N/A physical interaction ComPPI
PLSCR1 RETREG3 25348397 N/A physical interaction ComPPI
SLC4A2 RETREG3 25348397 N/A physical interaction ComPPI
CD47 RETREG3 25348397 N/A physical interaction ComPPI
VAPB RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
STX8 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
VAMP3 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
MCRS1 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
GABARAP RETREG3 24234451 25348397 26040720 physical association pull down,physical interaction ComPPI,IntAct
MAP1LC3A RETREG3 24234451 25348397 25416956 physical association pull down,physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
RTN4 RETREG3 25348397 N/A physical interaction ComPPI
UBE2A RETREG3 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
PLP2 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
HTR2C RETREG3 25348397 N/A physical interaction ComPPI
MT-CO1 RETREG3 25348397 N/A physical interaction ComPPI
FKBP8 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
ELAVL1 RETREG3 25348397 N/A physical interaction ComPPI
STX5 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
DERL1 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
NCAM1 RETREG3 25348397 N/A physical interaction ComPPI
SENP2 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
SEC62 RETREG3 25348397 N/A physical interaction ComPPI
GOSR2 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
BET1 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
VAMP4 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
SCD RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
ERG28 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
NDUFAF1 RETREG3 25348397 N/A physical interaction ComPPI
GABARAPL1 RETREG3 24234451 25348397 25416956 26040720 physical association pull down,physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
PRAF2 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
ORMDL3 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
LPAR1 RETREG3 25348397 N/A physical interaction ComPPI
CD63 RETREG3 25348397 N/A physical interaction ComPPI
LPAR3 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
MAS1 RETREG3 25348397 N/A physical interaction ComPPI
TCEA2 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
TUBA3C RETREG3 25348397 N/A physical interaction ComPPI
NXF1 RETREG3 25348397 N/A physical interaction ComPPI
MOV10 RETREG3 25348397 N/A physical interaction ComPPI
ATP5PB RETREG3 25348397 N/A physical interaction ComPPI
CDIPT RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
OTULINL RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
RETREG3 TSPAN5 25348397 N/A physical interaction ComPPI
RETREG3 CERS6 25348397 N/A physical interaction ComPPI
RETREG3 IFITM3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
RETREG3 TECR 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
CCL4L1 RETREG3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct

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