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GENE：TRIM38

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol TRIM38
FullNmae tripartite motif containing 38
LocusType gene with protein product
Status Approved
HGNC_id HGNC:10059
EnsembleID ENSG00000112343
Uniprot O00635

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
TRIM38 autophagy 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature
TRIM38 autophagy 36341760 The PCD-related genes contained the key regulatory genes of twelve PCD patterns which is mentioned above. Genes were collected from GSEA gene sets, KEGG, review articles, and manual collation [10]. The ultimate gene list was the concatenation regulatory genes of twelve PCD patterns. regulator signature

Go Annotation:

GeneSymbol Go id
TRIM38 GO:0000209,GO:0003713,GO:0005515,GO:0005575,GO:0005654,GO:0005737,GO:0005829,GO:0005829,GO:0008270,GO:0010508,GO:0016567,GO:0016925,GO:0019901,GO:0032648,GO:0032880,GO:0042803,GO:0043123,GO:0043123,GO:0043123,GO:0043161,GO:0045070,GO:0045087,GO:0045893,GO:0046596,GO:0046598,GO:0050687,GO:0051091,GO:0051092,GO:0051092,GO:0061630,GO:0061630

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
IRF8 TRIM38 22096565 23180781 physical association anti tag coimmunoprecipitation InnateDB
TRIM38 AZI2 22539786 23180781 physical association anti tag coimmunoprecipitation InnateDB
TRIM38 ELAVL1 19322201 23180781 physical association anti tag coimmunoprecipitation InnateDB

Source Target Pmid Interactiontype Methods Database
AR TRIM38 20610535 trascriptional regulation,stimulation chromatin immunoprecipitation array TFlink
GATA1 TRIM38 19941826 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
GATA2 TRIM38 19941826 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
YBX1 TRIM38 19151767 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
FOXP3 TRIM38 20554955 trascriptional regulation,stimulation chromatin immunoprecipitation array TFlink
PRDM14 TRIM38 18971253 20953172 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
SMARCA4 TRIM38 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CEBPA TRIM38 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF TRIM38 18971253 trascriptional regulation,stimulation inferred by curator TFlink
EGR1 TRIM38 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOXP1 TRIM38 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOS TRIM38 18971253 trascriptional regulation,stimulation inferred by curator TFlink
HNF4A TRIM38 18971253 trascriptional regulation,stimulation inferred by curator TFlink
MITF TRIM38 18971253 trascriptional regulation,stimulation inferred by curator TFlink
SPI1 TRIM38 18971253 trascriptional regulation,stimulation inferred by curator TFlink
VDR TRIM38 18971253 trascriptional regulation,stimulation inferred by curator TFlink
TP53 TRIM38 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS000009262D TRIM38 18591254 25416803 mrna cleavage,inhibition array technology TarBase
URS000009C45F TRIM38 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS00001E96DA TRIM38 20371350 25416803 mrna cleavage,inhibition clip TarBase
URS000006DA05 TRIM38 20371350 25416803 mrna cleavage,inhibition clip TarBase
URS000018E72A TRIM38 20371350 25416803 mrna cleavage,inhibition clip TarBase
URS000027352D TRIM38 20371350 25416803 mrna cleavage,inhibition clip TarBase
URS00000753AD TRIM38 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS0000544FF1 TRIM38 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS000048D44E TRIM38 25416803 27418678 mrna cleavage,inhibition clip TarBase
URS0000086A4D TRIM38 25416803 27418678 mrna cleavage,inhibition clip TarBase
URS0000475586 TRIM38 25416803 27418678 mrna cleavage,inhibition clip TarBase
URS000031BC7D TRIM38 25416803 27418678 mrna cleavage,inhibition clip TarBase

Source Target Pmid Interactiontype Methods Database
GMCL1 TRIM38 25348397 N/A two hybrid,physical interaction ComPPI
BYSL TRIM38 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
UBE2I TRIM38 25348397 N/A physical interaction ComPPI
TRIM38 EIF1B 25348397 N/A two hybrid,physical interaction ComPPI
TRIM38 HSPA8 24234451 25348397 25416956 physical association two hybrid,physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
TRIM38 HSPA2 24234451 25348397 25416956 physical association two hybrid,physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
TRIM38 TSPYL4 24234451 25348397 25416956 physical association two hybrid,physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
TRIM38 RIPK1 11854271 14525934 24234451 25348397 physical association two hybrid,coimmunoprecipitation,experimental interaction detection,in vivo,two hybrid ComPPI,HPRD,IntAct
TRIM38 UBE2U 19690564 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array ComPPI,IntAct
TRIM38 ELAVL1 25348397 N/A physical interaction ComPPI
TRIM38 UBE2D1 25348397 N/A physical interaction ComPPI
TRIM38 UBE2D2 25348397 N/A physical interaction ComPPI
TRIM38 UBE2D3 25348397 N/A physical interaction ComPPI
TRIM38 UBE2D4 25348397 N/A physical interaction ComPPI
TRIM38 UBE2E1 25348397 N/A physical interaction ComPPI
TRIM38 UBE2E2 25348397 N/A physical interaction ComPPI
TRIM38 UBE2E3 25348397 N/A physical interaction ComPPI
TRIM38 TRAF6 25348397 N/A physical interaction ComPPI
TRIM38 ATXN1 23275563 24234451 25348397 physical association physical interaction,two hybrid prey pooling approach ComPPI,IntAct
TRIM38 TICAM1 25348397 N/A physical interaction ComPPI
TRIM38 HSPA1A 21988832 23414517 24234451 25348397 physical association two hybrid,physical interaction,two hybrid fragment pooling approach ComPPI,IntAct
TRIM38 HSPA1B 25348397 N/A two hybrid,physical interaction ComPPI
TRIM38 TAB2 25348397 N/A physical interaction ComPPI
TRIM38 TAB3 25348397 N/A physical interaction ComPPI
TRIM38 RFC5 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
TRIM38 SDCBP 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
TRIM38 STXBP1 24234451 25348397 25416956 25910212 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,two hybrid bait and prey pooling approach,validated two hybrid ComPPI,IntAct
TRIM38 GORASP2 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
TRIM38 GMCL2 25348397 N/A physical interaction ComPPI
TRIM38 AZI2 25348397 N/A physical interaction ComPPI
TRIM38 PIAS4 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
TRIM38 SUMO1P1 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
TRIM38 RNF4 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
TRIM38 HSPA1L 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
TRIM38 PSMA4 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
TRIM38 TCEA2 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
TRIM38 ZNF764 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
TRIM38 MTURN 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
TRIM38 TRIM38 24234451 25416956 physical association two hybrid array IntAct
TRIM38 AZI2 22539786 27898060 N/A N/A OmniPath

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