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GENE：TRIM39

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol TRIM39
FullNmae tripartite motif containing 39
LocusType gene with protein product
Status Approved
HGNC_id HGNC:10065
EnsembleID ENSG00000204599
Uniprot Q9HCM9

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
TRIM39 apoptosis 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature
TRIM39 apoptosis 36341760 The PCD-related genes contained the key regulatory genes of twelve PCD patterns which is mentioned above. Genes were collected from GSEA gene sets, KEGG, review articles, and manual collation [10]. The ultimate gene list was the concatenation regulatory genes of twelve PCD patterns. regulator signature

Go Annotation:

GeneSymbol Go id
TRIM39 GO:0005515,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005829,GO:0006915,GO:0007095,GO:0008270,GO:0016567,GO:0016567,GO:0032435,GO:0032435,GO:0042802,GO:0043124,GO:0050821,GO:0050821,GO:0061630,GO:1902806,GO:2000059,GO:2001235,GO:2001235

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
TRIM39 TRIM39 16189514 23180781 physical association pull down InnateDB
EGR1 TRIM39 19032775 23180781 physical association anti tag coimmunoprecipitation InnateDB

Source Target Pmid Interactiontype Methods Database
ETS1 TRIM39 20019798 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
E2F4 TRIM39 18971253 trascriptional regulation,stimulation inferred by curator TFlink
MITF TRIM39 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS00000C48FA TRIM39 22291592 25416803 mrna cleavage,inhibition clip TarBase
URS000041FA2C TRIM39 22291592 25416803 mrna cleavage,inhibition clip TarBase
URS000075BDA4 TRIM39 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS00002CEB74 TRIM39 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS0000070B1D TRIM39 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS0000224AEA TRIM39 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS00001CE046 TRIM39 23824327 25416803 mrna cleavage,inhibition clip TarBase

Source Target Pmid Interactiontype Methods Database
MOAP1 TRIM39 25361965 interaction type N/A PTMCode2
TRIM39 MOAP1 25361965 interaction type N/A PTMCode2

Source Target Pmid Interactiontype Methods Database
TTC32 TRIM39 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
SMCO3 TRIM39 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
TRIM21 TRIM39 22493164 24234451 25348397 25416956 physical association two hybrid,physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
ZNF490 TRIM39 25348397 N/A physical interaction ComPPI
ZKSCAN4 TRIM39 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
CDKN1A TRIM39 25348397 N/A physical interaction ComPPI
LXN TRIM39 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
RECK TRIM39 25348397 N/A physical interaction ComPPI
ZNF264 TRIM39 25348397 N/A physical interaction ComPPI
ZNF707 TRIM39 25348397 N/A physical interaction ComPPI
LMNA TRIM39 25348397 N/A physical interaction ComPPI
ZNF223 TRIM39 25348397 N/A physical interaction ComPPI
UBE2D1 TRIM39 14525934 16189514 19549727 21516116 24234451 25348397 25416956 physical association two hybrid,physical interaction,two hybrid array,two hybrid pooling approach,two hybrid fragment pooling approach,two hybrid prey pooling approach,validated two hybrid,two hybrid ComPPI,HPRD,IntAct
ZNF26 TRIM39 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
DCUN1D1 TRIM39 14525934 16189514 24234451 25348397 25416956 physical association two hybrid,physical interaction,two hybrid array,two hybrid pooling approach,two hybrid fragment pooling approach,two hybrid prey pooling approach,validated two hybrid,two hybrid ComPPI,HPRD,IntAct
CRK TRIM39 17474147 24234451 25348397 physical association peptide array ComPPI,IntAct
UBE2E2 TRIM39 19549727 21516116 24234451 25348397 25416956 physical association two hybrid,physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
MOAP1 TRIM39 19100260 25348397 27898060 N/A physical interaction ComPPI,OmniPath
UBTD1 TRIM39 16189514 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid pooling approach,two hybrid fragment pooling approach,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
UBE2E3 TRIM39 19549727 24234451 25348397 25416956 physical association two hybrid,physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
UBE2D4 TRIM39 14525934 16189514 19549727 24234451 25348397 25416956 physical association two hybrid,physical interaction,two hybrid array,two hybrid pooling approach,two hybrid fragment pooling approach,two hybrid prey pooling approach,validated two hybrid,two hybrid ComPPI,HPRD,IntAct
POLI TRIM39 21516116 24234451 25348397 25416956 physical association two hybrid,physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
CBX1 TRIM39 25348397 N/A physical interaction ComPPI
NCK1 TRIM39 17474147 24234451 25348397 physical association peptide array ComPPI,IntAct
GRB2 TRIM39 17474147 24234451 25348397 physical association peptide array ComPPI,IntAct
EPHB6 TRIM39 25348397 N/A physical interaction ComPPI
UBE2D2 TRIM39 19549727 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array ComPPI,IntAct
UBE2L3 TRIM39 19549727 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array ComPPI,IntAct
UBC TRIM39 25348397 N/A physical interaction ComPPI
UBE2N TRIM39 25348397 N/A physical interaction ComPPI
PSMA6 TRIM39 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
PDLIM5 TRIM39 16189514 24234451 25348397 physical association two hybrid,physical interaction,two hybrid pooling approach,two hybrid fragment pooling approach ComPPI,IntAct
UBAC1 TRIM39 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
MNAT1 TRIM39 22493164 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array ComPPI,IntAct
CBX5 TRIM39 25348397 N/A physical interaction ComPPI
UBE2K TRIM39 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
FYN TRIM39 17474147 24234451 25348397 physical association peptide array ComPPI,IntAct
DCX TRIM39 14525934 19094064 25348397 N/A experimental interaction detection,in vivo ComPPI,HPRD
UBE2D3 TRIM39 14525934 16189514 19549727 24234451 25348397 25416956 physical association two hybrid,physical interaction,two hybrid array,two hybrid pooling approach,two hybrid fragment pooling approach,two hybrid prey pooling approach,validated two hybrid,two hybrid ComPPI,HPRD,IntAct
EIF4A2 TRIM39 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
DIP2A TRIM39 25348397 N/A physical interaction ComPPI
KDM1A TRIM39 21516116 23455924 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
UBE2E1 TRIM39 19549727 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array ComPPI,IntAct
UBE2V1 TRIM39 19549727 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array ComPPI,IntAct
HINFP TRIM39 21516116 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
TRIM8 TRIM39 22493164 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array ComPPI,IntAct
LNX1 TRIM39 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
PRPF3 TRIM39 21516116 24234451 25348397 25416956 physical association two hybrid,physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
MED18 TRIM39 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
USP39 TRIM39 25348397 N/A physical interaction ComPPI
CCNC TRIM39 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
USP2 TRIM39 25348397 N/A physical interaction ComPPI
OTUB2 TRIM39 25348397 N/A physical interaction ComPPI
USP5 TRIM39 25348397 N/A physical interaction ComPPI
PSMD9 TRIM39 21516116 24234451 25348397 25416956 physical association two hybrid,physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
TRIM39 TRIM17 14525934 16189514 22493164 24234451 25348397 25416956 physical association anti tag coimmunoprecipitation,two hybrid,physical interaction,two hybrid array,two hybrid pooling approach,two hybrid fragment pooling approach,two hybrid prey pooling approach,validated two hybrid,two hybrid ComPPI,HPRD,IntAct
TRIM39 PLCD4 14525934 16189514 24234451 25348397 physical association two hybrid,physical interaction,two hybrid pooling approach,two hybrid fragment pooling approach,two hybrid ComPPI,HPRD,IntAct
TRIM39 UBE2W 19549727 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array ComPPI,IntAct
TRIM39 APP 25348397 N/A physical interaction ComPPI
TRIM39 CBX3 25348397 N/A physical interaction ComPPI
TRIM39 TP53 23213260 25348397 27898060 N/A physical interaction ComPPI,OmniPath
TRIM39 OTUD6A 25348397 N/A physical interaction ComPPI
TRIM39 RNF166 22493164 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array ComPPI,IntAct
TRIM39 WDFY3 21516116 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
TRIM39 UBXN1 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
TRIM39 UBXN6 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
TRIM39 ZNF621 25348397 N/A physical interaction ComPPI
TRIM39 ZNF562 25348397 N/A physical interaction ComPPI
TRIM39 ZNF19 25348397 N/A physical interaction ComPPI
TRIM39 ZNF419 25348397 N/A physical interaction ComPPI
TRIM39 CACTIN 25348397 26363554 27898060 N/A physical interaction ComPPI,OmniPath
TRIM39 ZNF764 25348397 N/A physical interaction ComPPI
TRIM39 ZNF354C 25348397 N/A physical interaction ComPPI
TRIM39 ZNF311 25348397 N/A physical interaction ComPPI
TRIM39 ZIM2 25348397 N/A physical interaction ComPPI
TRIM39 ZNF331 25348397 N/A physical interaction ComPPI
TRIM39 ZNF669 25348397 N/A physical interaction ComPPI
TRIM39 ZNF416 25348397 N/A physical interaction ComPPI
TRIM39 ZNF324B 25348397 N/A physical interaction ComPPI
TRIM39 ZNF816 25348397 N/A physical interaction ComPPI
TRIM39 ZNF556 25348397 N/A physical interaction ComPPI
TRIM39 ZNF214 25348397 N/A physical interaction ComPPI
TRIM39 ABL1 17474147 24234451 25348397 physical association peptide array ComPPI,IntAct
TRIM39 DCLK3 24234451 25348397 29534157 physical association two hybrid ComPPI,IntAct
UBTD2 TRIM39 25348397 N/A physical interaction ComPPI
TRIM39 TRIM39 14525934 16189514 21516116 22493164 24234451 25416956 physical association anti tag coimmunoprecipitation,two hybrid,pull down,two hybrid array,two hybrid pooling approach,two hybrid HPRD,IntAct

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