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GENE：APOBEC3B

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol APOBEC3B
FullNmae apolipoprotein B mRNA editing enzyme catalytic subunit 3B
LocusType gene with protein product
Status Approved
HGNC_id HGNC:17352
EnsembleID ENSG00000179750
Uniprot Q9UH17

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
APOBEC3B immunogenic 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature

Go Annotation:

GeneSymbol Go id
APOBEC3B GO:0000932,GO:0003723,GO:0003723,GO:0004126,GO:0005515,GO:0005634,GO:0005634,GO:0005654,GO:0005737,GO:0008270,GO:0009972,GO:0010526,GO:0016554,GO:0044355,GO:0045087,GO:0045869,GO:0047844,GO:0047844,GO:0051607,GO:0051607,GO:0070383,GO:0080111

KEGG Annotation:

GeneSymbol GeneID Pathway Pathway Name
APOBEC3B hsa:9582 path:hsa03250 Viral life cycle - HIV-1 - Homo sapiens (human)
APOBEC3B hsa:9582 path:hsa05170 Human immunodeficiency virus 1 infection - Homo sapiens (human)

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
YBX1 APOBEC3B 19151767 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
SMARCA4 APOBEC3B 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF APOBEC3B 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOS APOBEC3B 18971253 trascriptional regulation,stimulation inferred by curator TFlink
HNF4A APOBEC3B 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS00000AA464 APOBEC3B 20304954 25416803 mrna cleavage,inhibition array technology TarBase

Source Target Pmid Interactiontype Methods Database
PPP1CC APOBEC3B 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
PPP1CB APOBEC3B 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
HNRNPH2 APOBEC3B 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
MAP1LC3A APOBEC3B 20562859 24234451 25348397 association anti tag coimmunoprecipitation ComPPI,IntAct
EED APOBEC3B 25348397 N/A physical interaction ComPPI
BCLAF1 APOBEC3B 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
IFI16 APOBEC3B 25348397 N/A physical interaction ComPPI
HNRNPA1 APOBEC3B 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
GABARAPL1 APOBEC3B 20562859 24234451 25348397 association anti tag coimmunoprecipitation ComPPI,IntAct
ELAVL2 APOBEC3B 25348397 N/A physical interaction ComPPI
MATR3 APOBEC3B 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
MAP1LC3C APOBEC3B 20562859 24234451 25348397 association anti tag coimmunoprecipitation ComPPI,IntAct
MKI67 APOBEC3B 24234451 26949251 association anti tag coimmunoprecipitation IntAct

Visualization










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