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GENE：SMARCD3

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol SMARCD3
FullNmae SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
LocusType gene with protein product
Status Approved
HGNC_id HGNC:11108
EnsembleID ENSG00000082014
Uniprot Q6STE5

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
SMARCD3 mitotic_cd 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature
SMARCD3 immunogenic 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature
SMARCD3 autosis 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature

Go Annotation:

GeneSymbol Go id
SMARCD3 GO:0000785,GO:0000785,GO:0001221,GO:0002052,GO:0003139,GO:0003219,GO:0003407,GO:0003682,GO:0003712,GO:0003713,GO:0005102,GO:0005634,GO:0005634,GO:0005654,GO:0005654,GO:0006337,GO:0006338,GO:0006338,GO:0006338,GO:0006357,GO:0006357,GO:0007399,GO:0010971,GO:0016514,GO:0016514,GO:0016514,GO:0016922,GO:0030071,GO:0035060,GO:0042692,GO:0045582,GO:0045597,GO:0045663,GO:0045893,GO:0051152,GO:0070316,GO:0071564,GO:0071564,GO:0071564,GO:0071565,GO:0071565,GO:0140297,GO:2000045,GO:2000781,GO:2000819

KEGG Annotation:

GeneSymbol GeneID Pathway Pathway Name
SMARCD3 hsa:6604 path:hsa03082 ATP-dependent chromatin remodeling - Homo sapiens (human)
SMARCD3 hsa:6604 path:hsa04714 Thermogenesis - Homo sapiens (human)
SMARCD3 hsa:6604 path:hsa05225 Hepatocellular carcinoma - Homo sapiens (human)

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
STARD13 SMARCD3 14697242 23180781 physical association two hybrid InnateDB
PPARG SMARCD3 14701856 23180781 physical association two hybrid,pull down InnateDB
SMARCA4 SMARCD3 14701856 23180781 physical association anti tag coimmunoprecipitation InnateDB

Source Target Pmid Interactiontype Methods Database
GATA1 SMARCD3 19941826 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
GATA2 SMARCD3 19941826 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
YBX1 SMARCD3 19151767 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
SMARCA4 SMARCD3 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CEBPA SMARCD3 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF SMARCD3 18971253 trascriptional regulation,stimulation inferred by curator TFlink
EGR1 SMARCD3 18971253 trascriptional regulation,stimulation inferred by curator TFlink
RUNX1 SMARCD3 18971253 trascriptional regulation,stimulation inferred by curator TFlink
ZNF263 SMARCD3 18971253 trascriptional regulation,stimulation inferred by curator TFlink
TP63 SMARCD3 15988020 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS00001CC379 SMARCD3 23249749 25416803 mrna cleavage,inhibition miRNA interference luciferase reporter assay TarBase

Source Target Pmid Interactiontype Methods Database
PRKCI SMARCD3 22135298 phosphorylation N/A PhosphoSite
PRKCZ SMARCD3 22135298 phosphorylation N/A PhosphoSite
SMARCD3 SMARCA2 25361965 interaction type N/A PTMCode2
SMARCA2 SMARCD3 25361965 interaction type N/A PTMCode2
SMARCD3 SMARCC2 25361965 interaction type N/A PTMCode2
SMARCC2 SMARCD3 25361965 interaction type N/A PTMCode2
SMARCD3 SMARCA4 25361965 interaction type N/A PTMCode2
SMARCA4 SMARCD3 25361965 interaction type N/A PTMCode2
SMARCD3 RXRA 25361965 interaction type N/A PTMCode2
RXRA SMARCD3 25361965 interaction type N/A PTMCode2
SMARCC1 SMARCD3 25361965 interaction type N/A PTMCode2
SMARCD3 SMARCC1 25361965 interaction type N/A PTMCode2

Source Target Pmid Interactiontype Methods Database
SMARCE1 SMARCD3 18765789 24234451 25348397 association physical interaction,tandem affinity purification ComPPI,IntAct
RARA SMARCD3 25348397 N/A physical interaction ComPPI
SMARCC1 SMARCD3 14525934 18765789 24234451 25348397 9891079 association experimental interaction detection,physical interaction,tandem affinity purification ComPPI,HPRD,IntAct
RARB SMARCD3 25348397 N/A physical interaction ComPPI
TP53BP1 SMARCD3 24234451 25348397 29656893 association proximity-dependent biotin identification ComPPI,IntAct
ACTB SMARCD3 18765789 24234451 25348397 association tandem affinity purification ComPPI,IntAct
NR5A1 SMARCD3 14525934 14701856 25348397 N/A experimental interaction detection,in vitro ComPPI,HPRD
MYOD1 SMARCD3 25348397 N/A physical interaction ComPPI
GRB2 SMARCD3 17474147 24234451 25348397 physical association peptide array ComPPI,IntAct
JUN SMARCD3 14525934 14701856 25348397 N/A experimental interaction detection,physical interaction,in vitro ComPPI,HPRD
SMARCD1 SMARCD3 25348397 N/A physical interaction ComPPI
MAPK14 SMARCD3 25348397 N/A physical interaction ComPPI
ARHGAP1 SMARCD3 14525934 14697242 25348397 N/A two hybrid,two hybrid ComPPI,HPRD
SMARCA4 SMARCD3 18765789 24234451 25348397 association physical interaction,tandem affinity purification ComPPI,IntAct
SREBF1 SMARCD3 14525934 14701856 25348397 N/A experimental interaction detection,physical interaction,in vitro ComPPI,HPRD
PPARG SMARCD3 14525934 14701856 25348397 N/A experimental interaction detection,pull down,physical interaction,in vitro ComPPI,HPRD
HMGB1 SMARCD3 25348397 N/A physical interaction ComPPI
ARID1B SMARCD3 18765789 24234451 25348397 association physical interaction,tandem affinity purification ComPPI,IntAct
STARD13 SMARCD3 25348397 N/A physical interaction ComPPI
SMARCB1 SMARCD3 18765789 24234451 25348397 30108113 association pull down,physical interaction,tandem affinity purification ComPPI,IntAct
UPF2 SMARCD3 25348397 N/A physical interaction ComPPI
ACTL6A SMARCD3 18765789 24234451 25348397 association physical interaction,tandem affinity purification ComPPI,IntAct
MDC1 SMARCD3 24234451 25348397 29656893 association proximity-dependent biotin identification ComPPI,IntAct
TBL1X SMARCD3 25348397 N/A physical interaction ComPPI
SS18 SMARCD3 25348397 N/A physical interaction ComPPI
NUP50 SMARCD3 25348397 N/A physical interaction ComPPI
RORA SMARCD3 14525934 14701856 25348397 N/A experimental interaction detection,physical interaction,in vitro ComPPI,HPRD
TBL1XR1 SMARCD3 25348397 N/A physical interaction ComPPI
ESR1 SMARCD3 14525934 14701856 25348397 N/A experimental interaction detection,physical interaction,in vitro ComPPI,HPRD
SMARCD3 CCNE1 14525934 25348397 9891079 N/A experimental interaction detection,in vitro,in vivo ComPPI,HPRD
SMARCD3 NR1H4 25348397 N/A physical interaction,in vitro ComPPI
SMARCD3 NR5A2 14525934 14701856 25348397 N/A experimental interaction detection,in vitro ComPPI,HPRD
SMARCD3 PBX1 14525934 14701856 25348397 N/A experimental interaction detection,physical interaction,in vitro ComPPI,HPRD
SMARCD3 SMARCC2 18765789 24234451 25348397 association physical interaction,tandem affinity purification ComPPI,IntAct
SMARCD3 SMARCA2 18765789 24234451 25348397 association anti bait coimmunoprecipitation,physical interaction,tandem affinity purification ComPPI,IntAct
SMARCD3 ARID1A 18765789 24234451 25348397 association physical interaction,tandem affinity purification ComPPI,IntAct
SMARCD3 POLR2D 25348397 N/A physical interaction ComPPI
SMARCD3 CRNKL1 25348397 N/A physical interaction ComPPI
SMARCD3 CPSF2 25348397 N/A physical interaction ComPPI
SMARCD3 ESRRA 25348397 N/A physical interaction ComPPI
SMARCD3 DPF3 18765789 24234451 25348397 association physical interaction,tandem affinity purification ComPPI,IntAct
SMARCD3 DPF2 25348397 N/A physical interaction ComPPI
SMARCD3 BCL7A 25348397 N/A physical interaction ComPPI
SMARCD3 BCL7B 25348397 N/A physical interaction ComPPI
SMARCD3 BCL7C 25348397 N/A physical interaction ComPPI
SMARCD3 RANBP3 25348397 N/A physical interaction ComPPI
SMARCD3 RARG 25348397 N/A physical interaction ComPPI
SMARCD3 RXRA 14525934 14701856 25348397 N/A experimental interaction detection,physical interaction ComPPI,HPRD
SMARCD3 RELB 25348397 N/A physical interaction ComPPI
SMARCD3 CHD7 20130577 24234451 25348397 association anti bait coimmunoprecipitation,physical interaction ComPPI,IntAct
SMARCD3 PBRM1 18765789 24234451 25348397 association tandem affinity purification ComPPI,IntAct
SMARCD3 SMARCD2 18765789 24234451 25348397 association tandem affinity purification ComPPI,IntAct
FANCA SMARCD3 11726552 14525934 N/A experimental interaction detection HPRD
SMARCD3 SMARCD3 18765789 24234451 association tandem affinity purification IntAct
MYOD1 SMARCD3 15870273 22068056 27898060 stimulant N/A OmniPath
MAPK14 SMARCD3 21902831 27898060 stimulant N/A OmniPath
PRKCZ SMARCD3 23219531 27898060 N/A N/A OmniPath

Visualization










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