GENE：COL5A2
GeneInfo:
| GeneAttribute | GeneDescription |
|---|---|
| GeneSymbol | COL5A2 |
| FullNmae | collagen type V alpha 2 chain |
| LocusType | gene with protein product |
| Status | Approved |
| HGNC_id | HGNC:2210 |
| EnsembleID | ENSG00000204262 |
| Uniprot | P05997 |
Protein Structure:
Gene Description in Publicaton:
| GeneSymbol | CellDeathType | PMID | Description | GeneType |
|---|---|---|---|---|
| COL5A2 | immunogenic | 38538696 | The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) | retulator signature |
Go Annotation:
| GeneSymbol | Go id |
|---|---|
| COL5A2 | GO:0001501,GO:0001503,GO:0005576,GO:0005588,GO:0005588,GO:0005588,GO:0005592,GO:0005615,GO:0005788,GO:0030020,GO:0030020,GO:0030020,GO:0030198,GO:0030199,GO:0030199,GO:0030199,GO:0031012,GO:0043588,GO:0043588,GO:0043588,GO:0046332,GO:0046872,GO:0048592,GO:0062023,GO:0062023,GO:0062023,GO:0071230,GO:1903225 |
KEGG Annotation:
| GeneSymbol | GeneID | Pathway | Pathway Name |
|---|---|---|---|
| COL5A2 | hsa:1290 | path:hsa04974 | Protein digestion and absorption - Homo sapiens (human) |
Protein-Protein Interaction(String):
Signalink 3.0 modificators
| Source | Target | Pmid | Interactiontype | Methods | Database |
|---|---|---|---|---|---|
| AR | COL5A2 | 20610535 | trascriptional regulation,stimulation | chromatin immunoprecipitation array | TFlink |
| ESR1 | COL5A2 | 18414489 | trascriptional regulation,stimulation | chromatin immunoprecipitation array | TFlink |
| ETS1 | COL5A2 | 20019798 | trascriptional regulation,stimulation | chromatin immunoprecipitation assay | TFlink |
| PGR | COL5A2 | 20034404 | trascriptional regulation,stimulation | chromatin immunoprecipitation assay | TFlink |
| SMARCA4 | COL5A2 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| CEBPA | COL5A2 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| CTCF | COL5A2 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| E2F1 | COL5A2 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| FOXA1 | COL5A2 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| FOS | COL5A2 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| GATA2 | COL5A2 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| HNF4A | COL5A2 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| Source | Target | Pmid | Interactiontype | Methods | Database |
|---|---|---|---|---|---|
| URS000009262D | COL5A2 | 18591254 25416803 | mrna cleavage,inhibition | array technology | TarBase |
| URS0000153377 | COL5A2 | 23622248 25416803 | mrna cleavage,inhibition | clash | TarBase |
| URS0000008A99 | COL5A2 | 22942087 25416803 | mrna cleavage,inhibition | array technology | TarBase |
| URS0000076995 | COL5A2 | 22745231 25416803 | mrna cleavage,inhibition | miRNA interference luciferase reporter assay | TarBase |
| URS0000272A3D | COL5A2 | 22745231 25416803 | mrna cleavage,inhibition | miRNA interference luciferase reporter assay | TarBase |
| URS000045147B | COL5A2 | 22745231 25416803 | mrna cleavage,inhibition | miRNA interference luciferase reporter assay | TarBase |
| Source | Target | Pmid | Interactiontype | Methods | Database |
|---|---|---|---|---|---|
| TGM2 | COL5A2 | 24234451 25348397 26496610 | association | anti tag coimmunoprecipitation,physical interaction | ComPPI,IntAct |
| DDR1 | COL5A2 | 14525934 25348397 9659900 | N/A | experimental interaction detection,in vivo | ComPPI,HPRD |
| EWSR1 | COL5A2 | 25348397 | N/A | physical interaction | ComPPI |
| BMP1 | COL5A2 | 11741999 14525934 25348397 | N/A | experimental interaction detection,in vivo | ComPPI,HPRD |
| NES | COL5A2 | 24234451 30021884 | physical association | cross-linking study | IntAct |
| BMP1 | COL5A2 | 11741999 27898060 | N/A | N/A | OmniPath |