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GENE：VPS50

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol VPS50
FullNmae VPS50 subunit of EARP/GARPII complex
LocusType gene with protein product
Status Approved
HGNC_id HGNC:25956
EnsembleID ENSG00000004766
Uniprot Q96JG6

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
VPS50 immunogenic 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature

Go Annotation:

GeneSymbol Go id
VPS50 GO:0000149,GO:0000149,GO:0005515,GO:0015031,GO:0016020,GO:0032456,GO:0032456,GO:0032456,GO:0032456,GO:0048471,GO:0055037,GO:0055037,GO:0070062,GO:1990745,GO:1990745,GO:1990745

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
ETS1 VPS50 18971253 20019798 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
GATA2 VPS50 18971253 19941826 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
MYC VPS50 18414489 trascriptional regulation,stimulation chromatin immunoprecipitation array TFlink
YBX1 VPS50 19151767 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
SMARCA4 VPS50 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CEBPA VPS50 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF VPS50 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOXA1 VPS50 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOS VPS50 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS0000007340 VPS50 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS00000F4AC3 VPS50 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS00005CCD18 VPS50 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS00000DDD35 VPS50 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS0000298BA3 VPS50 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS00002B3783 VPS50 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS0000042E1F VPS50 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS00002075FA VPS50 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS00000600E6 VPS50 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS000039E1E1 VPS50 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS000012930C VPS50 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS0000237AF9 VPS50 19536157 20371350 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS0000065FDF VPS50 19536157 20371350 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS000040EC3B VPS50 19536157 20371350 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS000015188E VPS50 19536157 20371350 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS0000045DBD VPS50 19536157 20371350 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS00002CE0C6 VPS50 19536157 20371350 23824327 25416803 mrna cleavage,inhibition clip TarBase

Source Target Pmid Interactiontype Methods Database
OIP5 VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
TFPT VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
SNAP29 VPS50 25348397 N/A physical interaction ComPPI
VCP VPS50 25348397 N/A physical interaction ComPPI
CRABP2 VPS50 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
UBC VPS50 25348397 N/A physical interaction ComPPI
NTRK1 VPS50 25348397 N/A physical interaction ComPPI
HMG20A VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
RABGEF1 VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
VAMP3 VPS50 24234451 25348397 25799061 association pull down,physical interaction ComPPI,IntAct
BRF1 VPS50 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
LAMA1 VPS50 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
GIT2 VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
GRIPAP1 VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
TUFT1 VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
ARNTL VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
CD79B VPS50 25348397 N/A physical interaction ComPPI
CAVIN1 VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
DTNBP1 VPS50 25348397 N/A physical interaction ComPPI
KDM1A VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
PHF21A VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
YEATS4 VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
CLOCK VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
PKN3 VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
STX6 VPS50 24234451 25348397 25799061 association pull down,physical interaction ComPPI,IntAct
VAMP4 VPS50 24234451 25348397 25799061 association pull down,physical interaction ComPPI,IntAct
STX16 VPS50 24234451 25348397 25799061 association pull down,physical interaction ComPPI,IntAct
DDX19B VPS50 25348397 N/A physical interaction ComPPI
MAX VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
SF3B2 VPS50 25348397 N/A physical interaction ComPPI
DZIP3 VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
ZNF33A VPS50 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
R3HDM1 VPS50 25348397 N/A physical interaction ComPPI
NUF2 VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
SCLT1 VPS50 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
VPS52 VPS50 24234451 25348397 25799061 26496610 association,physical association anti bait coimmunoprecipitation,anti tag coimmunoprecipitation,pull down,physical interaction,tandem affinity purification ComPPI,IntAct
RAPGEF2 VPS50 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
FPR2 VPS50 25348397 N/A physical interaction ComPPI
AMBRA1 VPS50 25348397 N/A physical interaction ComPPI
THAP11 VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
FANCG VPS50 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
BSG VPS50 25348397 N/A physical interaction ComPPI
CCHCR1 VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
NCKAP5L VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
PHF20L1 VPS50 25348397 N/A physical interaction ComPPI
HAUS6 VPS50 24234451 25348397 physical association physical interaction,inference by socio-affinity scoring ComPPI,IntAct
CTNNBL1 VPS50 24234451 30021884 physical association cross-linking study IntAct

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