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GENE：RTRAF

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol RTRAF
FullNmae RNA transcription, translation and transport factor
LocusType gene with protein product
Status Approved
HGNC_id HGNC:23169
EnsembleID ENSG00000087302
Uniprot Q9Y224

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
RTRAF immunogenic 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature

Go Annotation:

GeneSymbol Go id
RTRAF GO:0000993,GO:0003723,GO:0003723,GO:0003723,GO:0005515,GO:0005634,GO:0005634,GO:0005654,GO:0005654,GO:0005737,GO:0005737,GO:0005813,GO:0005829,GO:0006388,GO:0006388,GO:0006388,GO:0006469,GO:0042802,GO:0045944,GO:0048471,GO:0050658,GO:0072669,GO:0072669,GO:0072669,GO:0072686

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
AR RTRAF 20610535 trascriptional regulation,stimulation chromatin immunoprecipitation array TFlink
ETS1 RTRAF 18971253 20019798 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
YBX1 RTRAF 19151767 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
FOXP3 RTRAF 20554955 trascriptional regulation,stimulation chromatin immunoprecipitation array TFlink
SMARCA4 RTRAF 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF RTRAF 18971253 trascriptional regulation,stimulation inferred by curator TFlink
E2F4 RTRAF 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOS RTRAF 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS00005651EE RTRAF 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00001597DC RTRAF 23622248 25416803 mrna cleavage,inhibition clash TarBase

Source Target Pmid Interactiontype Methods Database
KRT18 RTRAF 25348397 N/A physical interaction ComPPI
CUL5 RTRAF 25348397 N/A physical interaction ComPPI
BAG3 RTRAF 25348397 N/A physical interaction ComPPI
EIF2B2 RTRAF 25348397 N/A physical interaction ComPPI
GABARAPL2 RTRAF 20562859 24234451 25348397 association anti tag coimmunoprecipitation ComPPI,IntAct
CCDC22 RTRAF 25348397 N/A physical interaction ComPPI
BMI1 RTRAF 25348397 N/A physical interaction ComPPI
DCUN1D1 RTRAF 25348397 N/A physical interaction ComPPI
MCM2 RTRAF 25348397 N/A physical interaction ComPPI
RPA1 RTRAF 25348397 N/A physical interaction ComPPI
ILF2 RTRAF 25348397 N/A physical interaction ComPPI
PAFAH1B3 RTRAF 25348397 N/A physical interaction ComPPI
RTRAF NIN 14525934 15147888 24234451 25348397 colocalization,physical association two hybrid,experimental interaction detection,pull down,fluorescence microscopy,in vitro,in vivo,two hybrid ComPPI,HPRD,IntAct
RTRAF MEPCE 25348397 N/A physical interaction ComPPI
RTRAF DISC1 17043677 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
RTRAF TCF3 25348397 N/A physical interaction ComPPI
RTRAF CUL3 25348397 N/A physical interaction ComPPI
RTRAF CUL4B 25348397 N/A physical interaction ComPPI
RTRAF CUL2 25348397 N/A physical interaction ComPPI
RTRAF CUL1 25348397 N/A physical interaction ComPPI
RTRAF COPS5 25348397 N/A physical interaction ComPPI
RTRAF CAND1 25348397 N/A physical interaction ComPPI
RTRAF DDX1 24234451 25348397 30021884 physical association cross-linking study,physical interaction ComPPI,IntAct
RTRAF RTCB 25348397 N/A physical interaction ComPPI
RTRAF FAM98B 24234451 25348397 30021884 physical association cross-linking study,physical interaction ComPPI,IntAct
RTRAF C2ORF49 24234451 25348397 30021884 physical association cross-linking study,physical interaction ComPPI,IntAct
RTRAF MCM7 25348397 N/A physical interaction ComPPI
RTRAF NOTCH1 23022380 24234451 25348397 association physical interaction,tandem affinity purification ComPPI,IntAct
RTRAF FN1 19738201 24234451 25348397 association cross-linking study,physical interaction ComPPI,IntAct
RTRAF DAB2 25348397 N/A physical interaction ComPPI
RTRAF ABCF1 25348397 N/A physical interaction ComPPI
RTRAF YBX3 25348397 N/A physical interaction ComPPI
RTRAF DHX9 25348397 N/A physical interaction ComPPI
RTRAF EIF2B3 25348397 N/A physical interaction ComPPI
RTRAF FKBP3 25348397 N/A physical interaction ComPPI
RTRAF FLII 25348397 N/A physical interaction ComPPI
RTRAF LRRFIP1 25348397 N/A physical interaction ComPPI
RTRAF HNRNPU 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
RTRAF MRE11 25348397 N/A physical interaction ComPPI
RTRAF NMT1 25348397 N/A physical interaction ComPPI
RTRAF PRKDC 25348397 N/A physical interaction ComPPI
RTRAF RFC2 25348397 N/A physical interaction ComPPI
RTRAF RFC4 25348397 N/A physical interaction ComPPI
RTRAF SYNCRIP 25348397 N/A physical interaction ComPPI
RTRAF RPA3 25348397 N/A physical interaction ComPPI
RTRAF RPA2 25348397 N/A physical interaction ComPPI
RTRAF HUWE1 25348397 N/A physical interaction ComPPI
RTRAF FUS 25348397 N/A physical interaction ComPPI
RTRAF FAM98A 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
RTRAF OBSL1 25348397 N/A physical interaction ComPPI
RTRAF ABCE1 25348397 N/A physical interaction ComPPI
RTRAF HNRNPA1 25348397 N/A physical interaction ComPPI
RTRAF ACTR3B 25348397 N/A physical interaction ComPPI
RTRAF AHNAK 25348397 N/A physical interaction ComPPI
RTRAF DDX5 25348397 N/A physical interaction ComPPI
RTRAF PAFAH1B2 25348397 N/A physical interaction ComPPI
RTRAF HIP1R 25348397 N/A physical interaction ComPPI
RTRAF KDM3A 25348397 N/A physical interaction ComPPI
RTRAF TRIM25 25348397 N/A physical interaction ComPPI
RTRAF WARS1 25348397 N/A physical interaction ComPPI
RTRAF NTRK1 25348397 N/A physical interaction ComPPI
RTRAF DBN1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
RTRAF RPL10 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
RTRAF MATR3 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
RTRAF NOP56 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
RTRAF MTNR1A 25348397 N/A physical interaction ComPPI
RTRAF DLD 24234451 25348397 29128334 association cross-linking study,physical interaction ComPPI,IntAct
RTRAF DNM1L 24234451 25348397 29128334 association cross-linking study,physical interaction ComPPI,IntAct
RTRAF SOD1 24234451 25348397 29128334 association cross-linking study,physical interaction ComPPI,IntAct
RTRAF G3BP1 25348397 N/A physical interaction ComPPI
RTRAF CFTR 25348397 N/A physical interaction ComPPI
RTRAF YWHAZ 15161933 24234451 25348397 physical association pull down ComPPI,IntAct
RTRAF POLR2A 16950395 24234451 25348397 27898060 physical association anti bait coimmunoprecipitation ComPPI,IntAct,OmniPath
RTRAF JUN 24234451 25348397 25609649 association anti bait coimmunoprecipitation ComPPI,IntAct
STK38L RTRAF 24234451 30108113 association proximity-dependent biotin identification IntAct

Visualization










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