GENE：SRRM4
GeneInfo:
| GeneAttribute | GeneDescription |
|---|---|
| GeneSymbol | SRRM4 |
| FullNmae | serine/arginine repetitive matrix 4 |
| LocusType | gene with protein product |
| Status | Approved |
| HGNC_id | HGNC:29389 |
| EnsembleID | ENSG00000139767 |
| Uniprot | A7MD48 |
Protein Structure:
Gene Description in Publicaton:
| GeneSymbol | CellDeathType | PMID | Description | GeneType |
|---|---|---|---|---|
| SRRM4 | immunogenic | 38538696 | The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) | retulator signature |
Go Annotation:
| GeneSymbol | Go id |
|---|---|
| SRRM4 | GO:0000381,GO:0000381,GO:0003729,GO:0003729,GO:0005515,GO:0005634,GO:0005634,GO:0006397,GO:0006397,GO:0007399,GO:0007605,GO:0008380,GO:0030154,GO:0042551,GO:0042802,GO:0043484,GO:0043484 |
Protein-Protein Interaction(String):
Signalink 3.0 modificators
| Source | Target | Pmid | Interactiontype | Methods | Database |
|---|---|---|---|---|---|
| GATA2 | SRRM4 | 19941826 | trascriptional regulation,stimulation | chromatin immunoprecipitation assay | TFlink |
| YBX1 | SRRM4 | 19151767 | trascriptional regulation,stimulation | chromatin immunoprecipitation assay | TFlink |
| CTCF | SRRM4 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| E2F1 | SRRM4 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| EGR1 | SRRM4 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| FOXA1 | SRRM4 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| FOXP1 | SRRM4 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| TRIM28 | SRRM4 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| Source | Target | Pmid | Interactiontype | Methods | Database |
|---|---|---|---|---|---|
| URS000028DE3F | SRRM4 | 22100165 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS0000086A4D | SRRM4 | 22100165 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS0000250A40 | SRRM4 | 20371350 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS00000D0BB4 | SRRM4 | 23824327 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS0000016914 | SRRM4 | 23824327 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS000034979B | SRRM4 | 23824327 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS000076B539 | SRRM4 | 22927820 23313552 23824327 25416803 27418678 | mrna cleavage,inhibition | clip | TarBase |
| URS00000C48FA | SRRM4 | 22927820 23313552 23824327 25416803 27418678 | mrna cleavage,inhibition | clip | TarBase |
| URS00005F305A | SRRM4 | 23824327 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS000075E2C3 | SRRM4 | 23824327 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS000054A671 | SRRM4 | 23824327 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS0000105D19 | SRRM4 | 23824327 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS00000BA274 | SRRM4 | 23824327 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS00003758F0 | SRRM4 | 23824327 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS0000475586 | SRRM4 | 23706177 25416803 27292025 27418678 | mrna cleavage,inhibition | clip | TarBase |
| Source | Target | Pmid | Interactiontype | Methods | Database |
|---|---|---|---|---|---|
| CLK4 | SRRM4 | 24234451 25348397 | physical association | two hybrid,two hybrid array,two hybrid prey pooling approach | ComPPI,IntAct |
| SNIP1 | SRRM4 | 24234451 25348397 | physical association | two hybrid,two hybrid array,two hybrid prey pooling approach | ComPPI,IntAct |
| SNRNP70 | SRRM4 | 24234451 25348397 | physical association | two hybrid,two hybrid array,two hybrid prey pooling approach | ComPPI,IntAct |
| RBM39 | SRRM4 | 24234451 25348397 | physical association | two hybrid,two hybrid array,two hybrid prey pooling approach | ComPPI,IntAct |
| CACNA1A | SRRM4 | 21078624 24234451 25348397 | physical association | two hybrid,physical interaction | ComPPI,IntAct |
| EGFR | SRRM4 | 25348397 | N/A | physical interaction | ComPPI |
| MCRS1 | SRRM4 | 24234451 25348397 | physical association | two hybrid,two hybrid array,two hybrid prey pooling approach | ComPPI,IntAct |
| ZRSR2 | SRRM4 | 24234451 25348397 | physical association | two hybrid,two hybrid array,two hybrid prey pooling approach | ComPPI,IntAct |
| CDC37 | SRRM4 | 24234451 25348397 | physical association | two hybrid,two hybrid array,two hybrid prey pooling approach | ComPPI,IntAct |
| RNPS1 | SRRM4 | 24234451 25348397 | physical association | two hybrid,two hybrid array,two hybrid prey pooling approach | ComPPI,IntAct |
| LUC7L2 | SRRM4 | 24234451 25348397 | physical association | two hybrid,two hybrid array,two hybrid prey pooling approach | ComPPI,IntAct |
| SRRM1 | SRRM4 | 24234451 25348397 | physical association | two hybrid,two hybrid array,two hybrid prey pooling approach | ComPPI,IntAct |
| WDR5 | SRRM4 | 24234451 25348397 | physical association | two hybrid,two hybrid array,two hybrid prey pooling approach | ComPPI,IntAct |
| RSRC1 | SRRM4 | 24234451 25348397 | physical association | two hybrid,two hybrid array,two hybrid prey pooling approach | ComPPI,IntAct |
| RBM25 | SRRM4 | 24234451 25348397 | physical association | two hybrid,two hybrid array,two hybrid prey pooling approach | ComPPI,IntAct |
| SRRM4 | FAM9B | 24234451 25348397 | physical association | two hybrid,two hybrid array,two hybrid prey pooling approach | ComPPI,IntAct |