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GENE：COPB1

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol COPB1
FullNmae COPI coat complex subunit beta 1
LocusType gene with protein product
Status Approved
HGNC_id HGNC:2231
EnsembleID ENSG00000129083
Uniprot P53618

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
COPB1 immunogenic 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature

Go Annotation:

GeneSymbol Go id
COPB1 GO:0000139,GO:0005198,GO:0005515,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005829,GO:0005829,GO:0005886,GO:0006886,GO:0006888,GO:0006891,GO:0006891,GO:0016020,GO:0030126,GO:0030126,GO:0030133,GO:0030667,GO:0043231,GO:0070821,GO:0101003

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
ERBIN COPB1 15123239 23180781 physical association peptide array InnateDB
COPB1 SNTA1 15123239 23180781 physical association peptide array InnateDB
EZH2 COPB1 23180781 24457600 physical association anti tag coimmunoprecipitation InnateDB
RNF2 COPB1 23180781 24457600 physical association anti tag coimmunoprecipitation InnateDB

Source Target Pmid Interactiontype Methods Database
ETS1 COPB1 18971253 20019798 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
GATA2 COPB1 18971253 19941826 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
FOXP3 COPB1 20554955 trascriptional regulation,stimulation chromatin immunoprecipitation array TFlink
SMARCA4 COPB1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF COPB1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
E2F1 COPB1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
E2F4 COPB1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
EGR1 COPB1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
HNF4A COPB1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
TAL1 COPB1 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS00002C0FCB COPB1 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS000040EE1D COPB1 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00002367FA COPB1 23622248 25416803 mrna cleavage,inhibition clash TarBase

Source Target Pmid Interactiontype Methods Database
COPB1 COPZ1 25361965 interaction type N/A PTMCode2
COPZ1 COPB1 25361965 interaction type N/A PTMCode2
COPB1 ARCN1 25361965 interaction type N/A PTMCode2
ARCN1 COPB1 25361965 interaction type N/A PTMCode2
COPB1 GOLPH3 25361965 interaction type N/A PTMCode2
GOLPH3 COPB1 25361965 interaction type N/A PTMCode2
COPB1 ARF1 25361965 interaction type N/A PTMCode2
ARF1 COPB1 25361965 interaction type N/A PTMCode2
COPB1 COPB2 25361965 interaction type N/A PTMCode2
COPB2 COPB1 25361965 interaction type N/A PTMCode2
COPB1 KDELR1 25361965 interaction type N/A PTMCode2
KDELR1 COPB1 25361965 interaction type N/A PTMCode2
COPB1 COPA 25361965 interaction type N/A PTMCode2
COPA COPB1 25361965 interaction type N/A PTMCode2

Source Target Pmid Interactiontype Methods Database
SNW1 COPB1 20467437 24234451 25348397 association anti bait coimmunoprecipitation,physical interaction ComPPI,IntAct
CDC5L COPB1 20467437 24234451 25348397 association anti bait coimmunoprecipitation,physical interaction ComPPI,IntAct
KPNA3 COPB1 25348397 N/A physical interaction ComPPI
KPNA4 COPB1 25348397 N/A physical interaction ComPPI
HLA-DPB1 COPB1 21988832 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array ComPPI,IntAct
LZTS2 COPB1 21988832 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
NPM1 COPB1 25348397 N/A physical interaction ComPPI
WBP2 COPB1 25348397 N/A physical interaction ComPPI
FOXB1 COPB1 21988832 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array ComPPI,IntAct
KEAP1 COPB1 25348397 N/A physical interaction ComPPI
SERTAD1 COPB1 21988832 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
ASF1A COPB1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
ERBIN COPB1 25348397 N/A physical interaction ComPPI
TLE3 COPB1 25348397 N/A physical interaction ComPPI
EZH2 COPB1 25348397 N/A physical interaction ComPPI
PPP1R15A COPB1 24234451 25348397 29109149 association anti tag coimmunoprecipitation ComPPI,IntAct
GRB2 COPB1 21988832 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array ComPPI,IntAct
JUN COPB1 24234451 25348397 25609649 association anti bait coimmunoprecipitation ComPPI,IntAct
TCF20 COPB1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SF3B1 COPB1 25348397 N/A physical interaction ComPPI
PRKCE COPB1 11897493 14525934 25348397 N/A experimental interaction detection,in vivo ComPPI,HPRD
TAP1 COPB1 25348397 N/A physical interaction ComPPI
TAPBP COPB1 11884415 14525934 25348397 N/A experimental interaction detection,physical interaction,in vitro,in vivo ComPPI,HPRD
YWHAZ COPB1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
PDGFRB COPB1 14525934 25348397 9207175 N/A experimental interaction detection,in vivo ComPPI,HPRD
UBC COPB1 25348397 N/A physical interaction ComPPI
NTRK1 COPB1 25348397 N/A physical interaction ComPPI
ENO1 COPB1 25348397 N/A physical interaction ComPPI
CANX COPB1 25348397 N/A physical interaction ComPPI
RGS4 COPB1 10982407 14525934 25348397 N/A two hybrid,experimental interaction detection,in vivo,two hybrid ComPPI,HPRD
COPB1 ARCN1 14525934 24234451 25348397 8940050 physical association two hybrid,experimental interaction detection,physical interaction,two hybrid array,in vivo,two hybrid prey pooling approach ComPPI,HPRD,IntAct
COPB1 RGS2 10982407 14525934 25348397 N/A experimental interaction detection,in vivo ComPPI,HPRD
COPB1 KCNK3 12437930 14525934 25348397 N/A experimental interaction detection,physical interaction,in vitro,in vivo ComPPI,HPRD
COPB1 ADAM19 25348397 N/A two hybrid,physical interaction ComPPI
COPB1 COPG2 11409905 14525934 25348397 N/A two hybrid,experimental interaction detection,physical interaction,in vivo,two hybrid ComPPI,HPRD
COPB1 COPE 10921873 14525934 25348397 N/A two hybrid,physical interaction,two hybrid ComPPI,HPRD
COPB1 COPG1 11056392 14525934 18356299 24234451 25348397 association anti bait coimmunoprecipitation,two hybrid,experimental interaction detection,physical interaction,in vitro,in vivo,two hybrid ComPPI,HPRD,IntAct
COPB1 UBQLN4 14525934 16713569 24234451 25348397 physical association two hybrid,physical interaction,two hybrid ComPPI,HPRD,IntAct
COPB1 TRIM37 14525934 16189514 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array,two hybrid pooling approach,two hybrid fragment pooling approach,two hybrid prey pooling approach,two hybrid ComPPI,HPRD,IntAct
COPB1 KDELR1 11703931 14525934 19109439 24234451 25348397 physical association anti bait coimmunoprecipitation,experimental interaction detection,physical interaction,in vitro,in vivo ComPPI,HPRD,IntAct
COPB1 ARF1 10318838 10720466 10921873 14525934 15202998 25348397 27898060 N/A experimental interaction detection,physical interaction,in vitro,in vivo ComPPI,HPRD,OmniPath
COPB1 HLA-G 12582157 14525934 25348397 27898060 N/A experimental interaction detection,physical interaction,in vivo ComPPI,HPRD,OmniPath
COPB1 COPA 25348397 N/A physical interaction ComPPI
COPB1 COPB2 25348397 N/A physical interaction ComPPI
COPB1 HLA-A 25348397 N/A physical interaction ComPPI
COPB1 PMS2 25348397 N/A physical interaction ComPPI
COPB1 PMS2CL 25348397 N/A physical interaction ComPPI
COPB1 HDAC5 25348397 N/A physical interaction ComPPI
COPB1 SIRT7 25348397 N/A physical interaction ComPPI
COPB1 CDK2 25348397 N/A physical interaction ComPPI
COPB1 SACM1L 14527956 24234451 25348397 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
COPB1 TMED10 24234451 25348397 9472029 association affinity chromatography technology,physical interaction ComPPI,IntAct
COPB1 COPZ1 18356299 24234451 25348397 association anti bait coimmunoprecipitation,physical interaction ComPPI,IntAct
COPB1 LMAN1 25348397 N/A physical interaction ComPPI
COPB1 APP 25348397 N/A physical interaction ComPPI
COPB1 FMNL1 25348397 N/A physical interaction ComPPI
COPB1 FN1 19738201 24234451 25348397 association cross-linking study,physical interaction ComPPI,IntAct
COPB1 CFTR 17110338 24234451 25348397 association anti bait coimmunoprecipitation,physical interaction ComPPI,IntAct
COPB1 SNTA1 25348397 N/A physical interaction ComPPI
COPB1 HDAC10 23752268 24234451 25348397 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
COPB1 KCNK9 25348397 N/A physical interaction ComPPI
COPB1 XRCC6 21988832 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array ComPPI,IntAct
COPB1 ID1 21988832 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array ComPPI,IntAct
COPB1 TANK 21988832 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
COPB1 IRAK3 21988832 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array ComPPI,IntAct
COPB1 NUB1 21988832 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
COPB1 VPS18 21988832 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
COPB1 FBXO6 25348397 N/A physical interaction ComPPI
COPB1 ACACA 25348397 N/A physical interaction ComPPI
COPB1 DIAPH1 25348397 N/A physical interaction ComPPI
COPB1 KLC1 25348397 N/A physical interaction ComPPI
COPB1 COA8 25348397 N/A physical interaction ComPPI
COPB1 NUDCD1 24234451 25036637 25348397 29021621 association,physical association anti tag coimmunoprecipitation,physical interaction,luminescence based mammalian interactome mapping ComPPI,IntAct
COPB1 SHMT2 25348397 N/A physical interaction ComPPI
COPB1 MOV10 25348397 N/A physical interaction ComPPI
COPB1 NXF1 25348397 N/A physical interaction ComPPI
COPB1 CCDC8 25348397 N/A physical interaction ComPPI
COPB1 RNF2 25348397 N/A physical interaction ComPPI
COPB1 ATAD3A 25348397 N/A physical interaction ComPPI
COPB1 CAD 25348397 N/A physical interaction ComPPI
COPB1 HSD17B12 25348397 N/A physical interaction ComPPI
COPB1 PC 25348397 N/A physical interaction ComPPI
COPB1 PSMD2 25348397 N/A physical interaction ComPPI
COPB1 RANBP6 25348397 N/A physical interaction ComPPI
COPB1 SF3B2 25348397 N/A physical interaction ComPPI
COPB1 UQCRC2 25348397 N/A physical interaction ComPPI
COPB1 IPO9 25348397 N/A physical interaction ComPPI
COPB1 MKS1 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
COPB1 TMEM216 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
COPB1 XPO1 25348397 N/A physical interaction ComPPI
COPB1 LLGL1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
COPB1 SKI 25348397 N/A physical interaction ComPPI
COPB1 RNF126 25348397 N/A physical interaction ComPPI
COPB1 POU5F1 25348397 N/A physical interaction ComPPI
COPB1 SPTBN1 25348397 N/A physical interaction ComPPI
COPB1 EDEM3 25348397 N/A physical interaction ComPPI
COPB1 BRCA1 25348397 N/A physical interaction ComPPI
COPB1 TES 25348397 N/A physical interaction ComPPI
COPB1 LNPK 25348397 N/A physical interaction ComPPI
COPB1 DRD3 25348397 N/A anti tag coimmunoprecipitation,physical interaction ComPPI
COPB1 TNFRSF1B 14743216 24234451 25348397 physical association tandem affinity purification ComPPI,IntAct
COPB1 BCR 15494376 24234451 25348397 colocalization fluorescence microscopy ComPPI,IntAct
COPB1 GBF1 19039328 24234451 25348397 physical association anti tag coimmunoprecipitation ComPPI,IntAct
COPB1 SUN2 20551905 22555292 24234451 25348397 association,physical association pull down ComPPI,IntAct
COPB1 DDHD2 20932832 24234451 25348397 colocalization fluorescence microscopy ComPPI,IntAct
COPB1 MAP1LC3A 20562859 24234451 25348397 association anti tag coimmunoprecipitation ComPPI,IntAct
COPB1 TMED9 24234451 25348397 9472029 association affinity chromatography technology ComPPI,IntAct
COPB1 HTT 17500595 24234451 25348397 physical association two hybrid ComPPI,IntAct
COPB1 RIPK4 24234451 25348397 26972000 association anti tag coimmunoprecipitation ComPPI,IntAct
COPB1 STK4 23386615 24234451 25348397 association tandem affinity purification ComPPI,IntAct
COPB1 OTUB1 24234451 25348397 26752685 association anti tag coimmunoprecipitation ComPPI,IntAct
COPB1 KIAA1328 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
COPB1 BCAR1 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
COPB1 LZTS1 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
COPB1 RRP1B 20926688 24234451 25348397 association anti tag coimmunoprecipitation ComPPI,IntAct
COPB1 TGOLN2 24234451 25348397 29568061 association pull down,proximity-dependent biotin identification ComPPI,IntAct
RHOQ COPB1 12134073 14525934 25348397 N/A experimental interaction detection,in vivo ComPPI,HPRD
ERBIN COPB1 15123239 27898060 N/A N/A OmniPath

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