Gene Information gene info

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GENE：COL13A1

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol COL13A1
FullNmae collagen type XIII alpha 1 chain
LocusType gene with protein product
Status Approved
HGNC_id HGNC:2190
EnsembleID ENSG00000197467
Uniprot Q5TAT6

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
COL13A1 immunogenic 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature

Go Annotation:

GeneSymbol Go id
COL13A1 GO:0001501,GO:0001763,GO:0001763,GO:0001958,GO:0005515,GO:0005576,GO:0005600,GO:0005615,GO:0005788,GO:0005886,GO:0005911,GO:0007160,GO:0007160,GO:0008201,GO:0008201,GO:0030020,GO:0030020,GO:0030154,GO:0030198,GO:0045211,GO:0062023,GO:0062023,GO:0098609,GO:0098609

KEGG Annotation:

GeneSymbol GeneID Pathway Pathway Name
COL13A1 hsa:1305 path:hsa04974 Protein digestion and absorption - Homo sapiens (human)

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
AR COL13A1 20610535 trascriptional regulation,stimulation chromatin immunoprecipitation array TFlink
GATA2 COL13A1 18971253 19941826 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
YBX1 COL13A1 19151767 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
SMARCA4 COL13A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF COL13A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
E2F1 COL13A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
EGR1 COL13A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOXA1 COL13A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOS COL13A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
HNF4A COL13A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
MITF COL13A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
RUNX1 COL13A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
TRIM28 COL13A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
ZNF263 COL13A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS000075BEA7 COL13A1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00000EC1BE COL13A1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00004AE8D3 COL13A1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00001481F9 COL13A1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS000075BDAA COL13A1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS0000221168 COL13A1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00003380CC COL13A1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00005CC20C COL13A1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS0000156390 COL13A1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00000753AD COL13A1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS000041FA2C COL13A1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS000043C1C3 COL13A1 21572407 25416803 mrna cleavage,inhibition clip TarBase

Source Target Pmid Interactiontype Methods Database
SPARC COL13A1 25348397 N/A in vitro ComPPI
ITGA1 COL13A1 10713152 25348397 27898060 N/A in vivo ComPPI,OmniPath
HSPG2 COL13A1 25348397 N/A in vitro ComPPI
NID1 COL13A1 25348397 N/A in vitro ComPPI
COL13A1 NID2 25348397 N/A in vitro ComPPI
HMGA1 COL13A1 24234451 30021884 physical association cross-linking study IntAct

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