Gene Information gene info

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GENE：CCDC88C

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol CCDC88C
FullNmae coiled-coil domain containing 88C
LocusType gene with protein product
Status Approved
HGNC_id HGNC:19967
EnsembleID ENSG00000015133
Uniprot Q9P219

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
CCDC88C immunogenic 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature

Go Annotation:

GeneSymbol Go id
CCDC88C GO:0001932,GO:0001965,GO:0003383,GO:0005085,GO:0005109,GO:0005515,GO:0005737,GO:0005737,GO:0005813,GO:0007264,GO:0008017,GO:0030054,GO:0030054,GO:0030165,GO:0030705,GO:0031098,GO:0031122,GO:0031648,GO:0035567,GO:0042802,GO:0043621,GO:0051959,GO:0070161,GO:0090090

KEGG Annotation:

GeneSymbol GeneID Pathway Pathway Name
CCDC88C hsa:440193 path:hsa04310 Wnt signaling pathway - Homo sapiens (human)

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
AR CCDC88C 20610535 trascriptional regulation,stimulation chromatin immunoprecipitation array TFlink
ETS1 CCDC88C 18971253 20019798 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
GATA2 CCDC88C 18971253 19941826 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
TFAP2C CCDC88C 20629094 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
FOXP3 CCDC88C 20554955 trascriptional regulation,stimulation chromatin immunoprecipitation array TFlink
SMARCA4 CCDC88C 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CEBPA CCDC88C 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF CCDC88C 18971253 trascriptional regulation,stimulation inferred by curator TFlink
E2F4 CCDC88C 18971253 trascriptional regulation,stimulation inferred by curator TFlink
EGR1 CCDC88C 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOXA1 CCDC88C 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOS CCDC88C 18971253 trascriptional regulation,stimulation inferred by curator TFlink
HNF4A CCDC88C 18971253 trascriptional regulation,stimulation inferred by curator TFlink
MITF CCDC88C 18971253 trascriptional regulation,stimulation inferred by curator TFlink
RUNX1 CCDC88C 18971253 trascriptional regulation,stimulation inferred by curator TFlink
SPI1 CCDC88C 18971253 trascriptional regulation,stimulation inferred by curator TFlink
TRIM28 CCDC88C 18971253 trascriptional regulation,stimulation inferred by curator TFlink
TAL1 CCDC88C 18971253 trascriptional regulation,stimulation inferred by curator TFlink
ZNF263 CCDC88C 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS0000237AF9 CCDC88C 18185580 25416803 mrna cleavage,inhibition array technology TarBase
URS0000183BED CCDC88C 20371350 25416803 mrna cleavage,inhibition nucleotide sequence identification TarBase
URS00000DDD35 CCDC88C 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS0000042E1F CCDC88C 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00001CF056 CCDC88C 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS00004A6E26 CCDC88C 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS00002B2B5C CCDC88C 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS000007A060 CCDC88C 20371350 25416803 mrna cleavage,inhibition clip TarBase
URS00000F0F49 CCDC88C 20371350 25416803 mrna cleavage,inhibition clip TarBase
URS0000171CD1 CCDC88C 20371350 25416803 mrna cleavage,inhibition clip TarBase
URS000040EE1D CCDC88C 20371350 25416803 mrna cleavage,inhibition clip TarBase
URS000041CB9C CCDC88C 20371350 25416803 mrna cleavage,inhibition clip TarBase
URS000007D64A CCDC88C 20371350 25416803 mrna cleavage,inhibition clip TarBase
URS0000236310 CCDC88C 22473208 25416803 mrna cleavage,inhibition clip TarBase
URS000018C928 CCDC88C 22473208 25416803 mrna cleavage,inhibition clip TarBase

Source Target Pmid Interactiontype Methods Database
DVL1 CCDC88C 25361965 interaction type N/A PTMCode2
CCDC88C DVL1 25361965 interaction type N/A PTMCode2

Source Target Pmid Interactiontype Methods Database
GNAI3 CCDC88C 25348397 N/A physical interaction ComPPI
BAG3 CCDC88C 25348397 N/A physical interaction ComPPI
MAPK8 CCDC88C 21900206 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
PKM CCDC88C 25348397 N/A protein kinase assay ComPPI
DVL1 CCDC88C 14525934 14750955 25348397 27898060 N/A two hybrid,experimental interaction detection,in vitro,in vivo,two hybrid ComPPI,HPRD,OmniPath
SMURF1 CCDC88C 25348397 N/A physical interaction ComPPI
KATNA1 CCDC88C 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
MCM7 CCDC88C 25348397 N/A physical interaction ComPPI
LATS2 CCDC88C 25348397 N/A physical interaction ComPPI
CCDC88C ITSN2 25348397 N/A physical interaction ComPPI
CCDC88C APP 25348397 N/A physical interaction ComPPI
CCDC88C NSD2 25348397 N/A physical interaction ComPPI
CCDC88C WDFY1 25348397 N/A physical interaction ComPPI
CCDC88C RNASE7 25348397 N/A physical interaction ComPPI
CCDC88C ALDH1L1 25348397 N/A physical interaction ComPPI
DVL1P1 CCDC88C 23151663 27898060 stimulant N/A OmniPath

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