Gene Information gene info

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GENE：SLIRP

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol SLIRP
FullNmae SRA stem-loop interacting RNA binding protein
LocusType gene with protein product
Status Approved
HGNC_id HGNC:20495
EnsembleID ENSG00000119705
Uniprot Q9GZT3

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
SLIRP immunogenic 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature

Go Annotation:

GeneSymbol Go id
SLIRP GO:0000961,GO:0001669,GO:0003723,GO:0005515,GO:0005634,GO:0005739,GO:0005739,GO:0007286,GO:0007338,GO:0030317,GO:0036126,GO:0048471,GO:0070584,GO:1990904

Protein-Protein Interaction(String):

Gene-Drug Network:

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
ADRB2 SLIRP 23180781 23798571 physical association anti tag coimmunoprecipitation InnateDB

Source Target Pmid Interactiontype Methods Database
ETS1 SLIRP 20019798 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
HNF4A SLIRP 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
SNRPC SLIRP 25348397 N/A physical interaction ComPPI
FHL3 SLIRP 25348397 N/A physical interaction ComPPI
TRAF6 SLIRP 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation ComPPI,IntAct
VCP SLIRP 25348397 N/A physical interaction ComPPI
KEAP1 SLIRP 25348397 N/A physical interaction ComPPI
WDR83 SLIRP 25348397 N/A physical interaction ComPPI
SF3B4 SLIRP 25348397 N/A physical interaction ComPPI
KRT40 SLIRP 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
PNMA1 SLIRP 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
DDIT4L SLIRP 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
RBM8A SLIRP 25348397 N/A physical interaction ComPPI
ERBB2 SLIRP 24189400 24234451 25348397 association tandem affinity purification ComPPI,IntAct
PICK1 SLIRP 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
SNRNP70 SLIRP 25348397 N/A physical interaction ComPPI
DSTN SLIRP 25348397 N/A physical interaction ComPPI
U2AF2 SLIRP 25348397 N/A physical interaction ComPPI
CSNK2A1 SLIRP 22113938 24234451 25348397 phosphorylation reaction physical interaction,protein kinase assay ComPPI,IntAct
CFTR SLIRP 25348397 N/A physical interaction ComPPI
EID1 SLIRP 25348397 N/A physical interaction ComPPI
HNRNPA2B1 SLIRP 25348397 N/A physical interaction ComPPI
ADRB2 SLIRP 25348397 N/A physical interaction ComPPI
VCAM1 SLIRP 22623428 24234451 25348397 association cross-linking study ComPPI,IntAct
LRPPRC SLIRP 22045337 24234451 25348397 26496610 27898060 association,physical association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct,OmniPath
PQBP1 SLIRP 25348397 N/A physical interaction ComPPI
PDK1 SLIRP 24234451 25348397 29568061 association proximity-dependent biotin identification ComPPI,IntAct
RFX5 SLIRP 25348397 N/A physical interaction ComPPI
HNRNPR SLIRP 25348397 N/A physical interaction ComPPI
EIF4G2 SLIRP 25348397 N/A physical interaction ComPPI
ELAVL1 SLIRP 25348397 N/A physical interaction ComPPI
CDC25C SLIRP 25348397 N/A physical interaction ComPPI
ESRRB SLIRP 25348397 N/A physical interaction ComPPI
AURKAIP1 SLIRP 24234451 25348397 29568061 association proximity-dependent biotin identification ComPPI,IntAct
WTAP SLIRP 24234451 25348397 29507755 association,physical association anti tag coimmunoprecipitation,two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
PPIF SLIRP 25348397 N/A physical interaction ComPPI
PIN4 SLIRP 25348397 N/A physical interaction ComPPI
PHACTR3 SLIRP 24234451 25348397 28330616 association pull down ComPPI,IntAct
HSPD1 SLIRP 24234451 25348397 29568061 association proximity-dependent biotin identification ComPPI,IntAct
ILF3 SLIRP 25348397 N/A physical interaction ComPPI
BABAM1 SLIRP 19615732 24234451 25348397 physical association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
MTUS2 SLIRP 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
MGST3 SLIRP 24234451 25348397 29568061 association proximity-dependent biotin identification ComPPI,IntAct
HAUS2 SLIRP 25348397 N/A physical interaction ComPPI
STK40 SLIRP 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
ECHDC2 SLIRP 25348397 N/A physical interaction ComPPI
SCAMP3 SLIRP 25348397 N/A physical interaction ComPPI
SLX1A SLIRP 19596235 24234451 25348397 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
RPL38 SLIRP 25348397 N/A physical interaction ComPPI
EPB41 SLIRP 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation ComPPI,IntAct
HLA-B SLIRP 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation ComPPI,IntAct
SBDS SLIRP 25348397 N/A physical interaction ComPPI
FTSJ1 SLIRP 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation ComPPI,IntAct
SLIRP MRPL58 20186120 24234451 25348397 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SLIRP SUGP1 25348397 N/A physical interaction ComPPI
SLIRP MRRF 25348397 N/A physical interaction ComPPI
SLIRP CCDC102B 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
SLIRP COA3 25348397 N/A physical interaction ComPPI
SLIRP NDUFAB1 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
SLIRP KRT27 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
SLIRP GOLGA6L9 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
TRMT61B SLIRP 24234451 25348397 29568061 association proximity-dependent biotin identification ComPPI,IntAct
SMARCB1 SLIRP 24234451 30108113 association pull down,proximity-dependent biotin identification IntAct

Source Target Pmid Interactiontype Methods Database
URS00009B3AED SLIRP 27087310 direct interaction,inhibition N/A NPInter

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