Gene Information gene info

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GENE：CCDC47

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol CCDC47
FullNmae coiled-coil domain containing 47
LocusType gene with protein product
Status Approved
HGNC_id HGNC:24856
EnsembleID ENSG00000108588
Uniprot Q96A33

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
CCDC47 immunogenic 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature

Go Annotation:

GeneSymbol Go id
CCDC47 GO:0001649,GO:0003723,GO:0005509,GO:0005515,GO:0005783,GO:0005783,GO:0005789,GO:0006457,GO:0006983,GO:0009791,GO:0016020,GO:0030433,GO:0030867,GO:0032469,GO:0036503,GO:0043022,GO:0044183,GO:0045048,GO:0101031,GO:0160063,GO:0160064

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
EGR1 CCDC47 19032775 23180781 physical association anti tag coimmunoprecipitation InnateDB
IRAK1 CCDC47 21903422 23180781 physical association anti tag coimmunoprecipitation InnateDB
IRF7 CCDC47 21903422 23180781 physical association anti tag coimmunoprecipitation InnateDB
TIRAP CCDC47 21903422 23180781 physical association anti tag coimmunoprecipitation InnateDB
SARM1 CCDC47 21903422 23180781 physical association anti tag coimmunoprecipitation InnateDB
STING1 CCDC47 21903422 23180781 physical association anti tag coimmunoprecipitation InnateDB
UNC93B1 CCDC47 21903422 23180781 physical association anti tag coimmunoprecipitation InnateDB

Source Target Pmid Interactiontype Methods Database
ETS1 CCDC47 18971253 20019798 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
GATA1 CCDC47 19941826 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
GATA2 CCDC47 19941826 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
TFAP2C CCDC47 20629094 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
SMARCA4 CCDC47 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CEBPA CCDC47 18971253 trascriptional regulation,stimulation inferred by curator TFlink
EGR1 CCDC47 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOXA1 CCDC47 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS00000F31F4 CCDC47 19074876 25416803 mrna cleavage,inhibition array technology TarBase
URS00000B59A2 CCDC47 19074876 25416803 mrna cleavage,inhibition array technology TarBase
URS00002971AB CCDC47 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS000039A052 CCDC47 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00005651EE CCDC47 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00000600E6 CCDC47 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS0000153377 CCDC47 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS000039E1E1 CCDC47 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00000DDD35 CCDC47 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS0000042E1F CCDC47 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00002075FA CCDC47 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS0000211070 CCDC47 22012620 25416803 mrna cleavage,inhibition clip TarBase
URS000018D2BE CCDC47 20371350 25416803 mrna cleavage,inhibition clip TarBase
URS000075AB14 CCDC47 20371350 25416803 mrna cleavage,inhibition clip TarBase
URS00000011DF CCDC47 20371350 25416803 mrna cleavage,inhibition clip TarBase

Source Target Pmid Interactiontype Methods Database
RPN1 CCDC47 25348397 N/A physical interaction ComPPI
MAGEA6 CCDC47 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation ComPPI,IntAct
LMNA CCDC47 24234451 25348397 29568061 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
JUN CCDC47 24234451 25348397 25609649 association anti bait coimmunoprecipitation ComPPI,IntAct
COPS5 CCDC47 25348397 N/A physical interaction ComPPI
CUL3 CCDC47 25348397 N/A physical interaction ComPPI
TOM1L1 CCDC47 14525934 16169070 24234451 25348397 physical association two hybrid,physical interaction,two hybrid pooling approach,two hybrid fragment pooling approach,two hybrid ComPPI,HPRD,IntAct
NTRK1 CCDC47 25348397 N/A physical interaction ComPPI
CANX CCDC47 24234451 25348397 29568061 association proximity-dependent biotin identification ComPPI,IntAct
PTPN1 CCDC47 25348397 N/A physical interaction ComPPI
ILK CCDC47 24234451 25348397 25852190 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
TIRAP CCDC47 21903422 24234451 25348397 association,physical association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
EVC2 CCDC47 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
IRAK1 CCDC47 25348397 N/A physical interaction ComPPI
RAB1A CCDC47 25348397 N/A physical interaction ComPPI
ECT2 CCDC47 25348397 N/A physical interaction ComPPI
CLTC CCDC47 25348397 N/A physical interaction ComPPI
ARF6 CCDC47 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation ComPPI,IntAct
RPL7A CCDC47 14525934 16169070 24234451 25348397 physical association two hybrid,two hybrid pooling approach,two hybrid fragment pooling approach,two hybrid ComPPI,HPRD,IntAct
EGFR CCDC47 25348397 N/A physical interaction ComPPI
PHB2 CCDC47 25348397 N/A physical interaction ComPPI
IRAK2 CCDC47 21903422 24234451 25348397 physical association anti tag coimmunoprecipitation ComPPI,IntAct
RAB1B CCDC47 25348397 N/A physical interaction ComPPI
TRIM25 CCDC47 25348397 N/A physical interaction ComPPI
AMFR CCDC47 25348397 N/A physical interaction ComPPI
IRF7 CCDC47 21903422 24234451 25348397 association,physical association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
PLGRKT CCDC47 24234451 25348397 29568061 association proximity-dependent biotin identification ComPPI,IntAct
CCDC47 TMBIM4 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation,physical interaction ComPPI,IntAct
CCDC47 PHLDA3 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation,physical interaction ComPPI,IntAct
CCDC47 CLN3 20562859 24234451 25348397 physical association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
CCDC47 SARM1 25348397 N/A physical interaction ComPPI
CCDC47 STING1 21903422 24234451 25348397 association,physical association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
CCDC47 UNC93B1 25348397 N/A physical interaction ComPPI
CCDC47 ERLIN2 21343306 24234451 25348397 association physical interaction,tandem affinity purification ComPPI,IntAct
CCDC47 CYB5B 25348397 N/A physical interaction ComPPI
CCDC47 PYCR1 25348397 N/A physical interaction ComPPI
CCDC47 RAB1C 25348397 N/A physical interaction ComPPI
CCDC47 TCTN2 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
CCDC47 TCTN3 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
CCDC47 TMEM237 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
CCDC47 TMEM17 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
CCDC47 TMEM216 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
CCDC47 TMEM67 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
CCDC47 CTDNEP1 25348397 N/A physical interaction ComPPI
CCDC47 TPTE 25348397 N/A physical interaction ComPPI
CCDC47 GSTK1 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation ComPPI,IntAct
CCDC47 RIPK4 24234451 25348397 26972000 association anti tag coimmunoprecipitation ComPPI,IntAct
CCDC47 KSR1 24234451 25348397 27086506 association anti tag coimmunoprecipitation ComPPI,IntAct
CCDC47 COX14 24234451 25348397 29568061 association proximity-dependent biotin identification ComPPI,IntAct
CCDC47 LAMP1 24234451 25348397 29568061 association proximity-dependent biotin identification ComPPI,IntAct
CCDC47 RPS6KB2 24234451 30021884 physical association cross-linking study IntAct
CCDC47 CEP162 24234451 30021884 physical association cross-linking study IntAct
CCDC47 PTPRS 24234451 30021884 physical association cross-linking study IntAct
CCDC47 MAP7D1 24234451 30021884 physical association cross-linking study IntAct
CCDC47 MFI 24234451 30021884 physical association cross-linking study IntAct
CCDC47 MPO 24234451 30021884 physical association cross-linking study IntAct
CCDC47 SCCPDH 24234451 30021884 physical association cross-linking study IntAct
IRF7 CCDC47 21903422 27898060 N/A N/A OmniPath
CCDC47 IRF7 21903422 27898060 N/A N/A OmniPath
TIRAP CCDC47 21903422 27898060 N/A N/A OmniPath
CCDC47 TIRAP 21903422 27898060 N/A N/A OmniPath
IRAK1 CCDC47 21903422 27898060 N/A N/A OmniPath
STING1 CCDC47 21903422 27898060 N/A N/A OmniPath

Visualization










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