GENE:CCDC28B
GeneInfo:
GeneAttribute | GeneDescription |
---|---|
GeneSymbol | CCDC28B |
FullNmae | coiled-coil domain containing 28B |
LocusType | gene with protein product |
Status | Approved |
HGNC_id | HGNC:28163 |
EnsembleID | ENSG00000160050 |
Uniprot | Q9BUN5 |
Protein Structure:
Gene Description in Publicaton:
GeneSymbol | CellDeathType | PMID | Description | GeneType |
---|---|---|---|---|
CCDC28B | immunogenic | 38538696 | The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) | retulator signature |
CCDC28B | ferroptosis | 38538696 | The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) | retulator signature |
CCDC28B | autosis | 38538696 | The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) | retulator signature |
CCDC28B | cuproptosis | 36010978 | Derived from the genome-wide CRISPR-Cas9 loss-of-function test reported in previous literature, 347 potential cuproptosis-related genes (FDR < 0.05) were identified, and for a detailed list of genes, see聽Supplementary Table S1. | Cuproptosis-related genes |
Go Annotation:
GeneSymbol | Go id |
---|---|
CCDC28B | GO:0005515,GO:0005737,GO:0005813,GO:0005813,GO:0060271 |
Protein-Protein Interaction(String):
Signalink 3.0 modificators
Source | Target | Pmid | Interactiontype | Methods | Database |
---|---|---|---|---|---|
ETS1 | CCDC28B | 18971253 20019798 | trascriptional regulation,stimulation | inferred by curator,chromatin immunoprecipitation assay | TFlink |
PRDM14 | CCDC28B | 18971253 20953172 | trascriptional regulation,stimulation | inferred by curator,chromatin immunoprecipitation assay | TFlink |
SMARCA4 | CCDC28B | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
CTCF | CCDC28B | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
E2F4 | CCDC28B | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
EGR1 | CCDC28B | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
ZNF263 | CCDC28B | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
Source | Target | Pmid | Interactiontype | Methods | Database |
---|---|---|---|---|---|
LAGE3 | CCDC28B | 24234451 25348397 27173435 | association,physical association | physical interaction,tandem affinity purification,inference by socio-affinity scoring | ComPPI,IntAct |
BBS2 | CCDC28B | 16327777 24234451 25348397 | physical association | anti tag coimmunoprecipitation,physical interaction | ComPPI,IntAct |
OSGEP | CCDC28B | 24234451 25348397 27173435 | association,physical association | physical interaction,tandem affinity purification,inference by socio-affinity scoring | ComPPI,IntAct |
BBS4 | CCDC28B | 16327777 24234451 25348397 | physical association | anti tag coimmunoprecipitation,two hybrid,physical interaction | ComPPI,IntAct |
TTC8 | CCDC28B | 16327777 24234451 25348397 | physical association | anti tag coimmunoprecipitation,physical interaction | ComPPI,IntAct |
PRAME | CCDC28B | 24234451 25348397 | physical association | physical interaction,inference by socio-affinity scoring | ComPPI,IntAct |
MKKS | CCDC28B | 16327777 24234451 25348397 | physical association | anti tag coimmunoprecipitation,physical interaction | ComPPI,IntAct |
APP | CCDC28B | 25348397 | N/A | physical interaction | ComPPI |
ATRIP | CCDC28B | 24234451 25348397 25416956 | physical association | physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid | ComPPI,IntAct |
BBS1 | CCDC28B | 16327777 24234451 25348397 | physical association | anti tag coimmunoprecipitation,physical interaction | ComPPI,IntAct |
HSPA1L | CCDC28B | 24234451 25348397 27173435 | association,physical association | physical interaction,tandem affinity purification,inference by socio-affinity scoring | ComPPI,IntAct |
IFT74 | CCDC28B | 24234451 25348397 | physical association | physical interaction,inference by socio-affinity scoring | ComPPI,IntAct |
IFT81 | CCDC28B | 24234451 25348397 | physical association | physical interaction,inference by socio-affinity scoring | ComPPI,IntAct |
CCDC28B | BBS5 | 16327777 24234451 25348397 | physical association | anti tag coimmunoprecipitation,physical interaction | ComPPI,IntAct |
CCDC28B | BBS7 | 16327777 24234451 25348397 | physical association | anti tag coimmunoprecipitation,physical interaction | ComPPI,IntAct |