Gene Information gene info

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GENE：CSDE1

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol CSDE1
FullNmae cold shock domain containing E1
LocusType gene with protein product
Status Approved
HGNC_id HGNC:29905
EnsembleID ENSG00000009307
Uniprot O75534

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
CSDE1 pyroptosis 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature
CSDE1 autosis 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature
CSDE1 apoptosis 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature

Go Annotation:

GeneSymbol Go id
CSDE1 GO:0000932,GO:0003723,GO:0005515,GO:0005794,GO:0005829,GO:0005886,GO:0006446,GO:0008584,GO:0010494,GO:0034063,GO:0035613,GO:0070934,GO:0070937,GO:0070966,GO:0075522,GO:0106002,GO:1900152,GO:2000767

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
ETS1 CSDE1 18971253 20019798 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
GATA2 CSDE1 19941826 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
MYC CSDE1 12747840 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
FOXP3 CSDE1 20554955 trascriptional regulation,stimulation chromatin immunoprecipitation array TFlink
SMARCA4 CSDE1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CEBPA CSDE1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF CSDE1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
E2F4 CSDE1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
EGR1 CSDE1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOXA1 CSDE1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
HNF4A CSDE1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
MITF CSDE1 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS0000007FBA CSDE1 20371350 21572407 25416803 mrna cleavage,inhibition nucleotide sequence identification,clip TarBase
URS00002971AB CSDE1 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00000BE495 CSDE1 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00001A7F58 CSDE1 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00000A939F CSDE1 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00003CF1AD CSDE1 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS0000183BED CSDE1 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS000029D9F1 CSDE1 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00001CC864 CSDE1 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS000019F055 CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS0000321A1A CSDE1 24374217 25416803 mrna cleavage,inhibition clip TarBase
URS0000081E1F CSDE1 24374217 25416803 mrna cleavage,inhibition clip TarBase
URS0000105D19 CSDE1 24374217 25416803 mrna cleavage,inhibition clip TarBase
URS000049FAE8 CSDE1 20371350 21572407 23446348 25416803 mrna cleavage,inhibition clip TarBase
URS000021D7C8 CSDE1 20371350 21572407 23446348 25416803 mrna cleavage,inhibition clip TarBase
URS0000610EFA CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00004F859B CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00000FFE5F CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00004719AB CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS000037E170 CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS0000077AED CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00002233F4 CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS000037D7E5 CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00003883FE CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00000DDD35 CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS0000298BA3 CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00002B3783 CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS0000042E1F CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00002075FA CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00000600E6 CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS000039E1E1 CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS000012930C CSDE1 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00001BCAC5 CSDE1 20371350 25416803 mrna cleavage,inhibition clip TarBase
URS000040EE1D CSDE1 22473208 25416803 mrna cleavage,inhibition clip TarBase
URS000041CB9C CSDE1 22473208 25416803 mrna cleavage,inhibition clip TarBase
URS0000171CD1 CSDE1 22473208 25416803 mrna cleavage,inhibition clip TarBase

Source Target Pmid Interactiontype Methods Database
UBE2I CSDE1 20936779 24234451 25348397 physical association two hybrid pooling approach,two hybrid fragment pooling approach ComPPI,IntAct
HSPA8 CSDE1 24234451 25348397 29568061 association pull down,physical interaction ComPPI,IntAct
PAK2 CSDE1 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation ComPPI,IntAct
TRAF6 CSDE1 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation ComPPI,IntAct
PIK3R1 CSDE1 17474147 24234451 25348397 physical association peptide array ComPPI,IntAct
NCK1 CSDE1 17474147 24234451 25348397 physical association peptide array ComPPI,IntAct
JUN CSDE1 24234451 25348397 25609649 association anti bait coimmunoprecipitation ComPPI,IntAct
COPS5 CSDE1 25348397 N/A physical interaction ComPPI
CUL3 CSDE1 25348397 N/A physical interaction ComPPI
JUP CSDE1 25348397 N/A physical interaction ComPPI
NTRK1 CSDE1 25348397 N/A physical interaction ComPPI
YBX1 CSDE1 24234451 25348397 25497084 association anti bait coimmunoprecipitation ComPPI,IntAct
WWP2 CSDE1 25348397 N/A physical interaction ComPPI
XRCC5 CSDE1 25348397 N/A physical interaction ComPPI
XRCC6 CSDE1 25348397 N/A physical interaction ComPPI
HNRNPL CSDE1 25348397 N/A physical interaction ComPPI
PABPC1 CSDE1 11051545 14525934 25348397 N/A experimental interaction detection,in vivo ComPPI,HPRD
XPO1 CSDE1 25348397 N/A physical interaction ComPPI
HUWE1 CSDE1 25348397 N/A physical interaction ComPPI
CUL1 CSDE1 25348397 N/A physical interaction ComPPI
SYNCRIP CSDE1 11051545 14525934 25348397 N/A experimental interaction detection,in vivo ComPPI,HPRD
STRAP CSDE1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
WWOX CSDE1 25348397 N/A physical interaction ComPPI
SUPT5H CSDE1 25348397 N/A physical interaction ComPPI
PPIA CSDE1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
WNK1 CSDE1 25348397 N/A physical interaction ComPPI
TRIM25 CSDE1 25348397 N/A physical interaction ComPPI
SSRP1 CSDE1 25348397 N/A physical interaction ComPPI
ELAVL1 CSDE1 25348397 N/A physical interaction ComPPI
HNRNPD CSDE1 11051545 14525934 25348397 N/A experimental interaction detection,in vivo ComPPI,HPRD
BRCA1 CSDE1 25348397 N/A physical interaction ComPPI
GANAB CSDE1 25348397 N/A physical interaction ComPPI
PAIP1 CSDE1 11051545 24234451 25348397 association anti bait coimmunoprecipitation,physical interaction ComPPI,IntAct
SENP3 CSDE1 25348397 N/A physical interaction ComPPI
PRKAB1 CSDE1 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation ComPPI,IntAct
TNFRSF10D CSDE1 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation ComPPI,IntAct
CSDE1 STT3A 14525934 16169070 24234451 25348397 physical association two hybrid,physical interaction,two hybrid pooling approach,two hybrid fragment pooling approach,two hybrid ComPPI,HPRD,IntAct
CSDE1 SIRT7 25348397 N/A physical interaction ComPPI
CSDE1 PDE3A 25348397 N/A physical interaction ComPPI
CSDE1 TRMT1 25348397 N/A physical interaction ComPPI
CSDE1 FAM9B 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
CSDE1 SAMD4A 25348397 N/A physical interaction ComPPI
CSDE1 G3BP1 25348397 N/A physical interaction ComPPI
CSDE1 MCC 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation ComPPI,IntAct
CSDE1 HLA-B 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation ComPPI,IntAct
CSDE1 GH1 17353931 24234451 25348397 physical association anti bait coimmunoprecipitation ComPPI,IntAct
CSDE1 OTUB1 24234451 25348397 26752685 association anti tag coimmunoprecipitation ComPPI,IntAct
CSDE1 KSR1 24234451 25348397 27086506 association anti tag coimmunoprecipitation ComPPI,IntAct
CSDE1 FBL 24234451 25348397 29568061 association proximity-dependent biotin identification ComPPI,IntAct
ATP6V1B2 CSDE1 25348397 N/A physical interaction ComPPI

Source Target Pmid Interactiontype Methods Database
URS00009B711C CSDE1 27087310 direct interaction,inhibition N/A NPInter

Visualization










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