Gene Information gene info

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GENE：COL17A1

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol COL17A1
FullNmae collagen type XVII alpha 1 chain
LocusType gene with protein product
Status Approved
HGNC_id HGNC:2194
EnsembleID ENSG00000065618
Uniprot Q9UMD9

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
COL17A1 pyroptosis 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature
COL17A1 immunogenic 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature
COL17A1 autosis 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature

Go Annotation:

GeneSymbol Go id
COL17A1 GO:0005515,GO:0005576,GO:0005581,GO:0005604,GO:0005615,GO:0005788,GO:0005886,GO:0005911,GO:0007160,GO:0008201,GO:0008544,GO:0030020,GO:0030020,GO:0030020,GO:0030056,GO:0030056,GO:0030198,GO:0031581,GO:0062023,GO:0062023

KEGG Annotation:

GeneSymbol GeneID Pathway Pathway Name
COL17A1 hsa:1308 path:hsa04974 Protein digestion and absorption - Homo sapiens (human)

Protein-Protein Interaction(String):

Gene-Drug Network:

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
TP63 COL17A1 20424327 23180781 physical association anti tag coimmunoprecipitation InnateDB

Source Target Pmid Interactiontype Methods Database
YBX1 COL17A1 19151767 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
SMARCA4 COL17A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CEBPA COL17A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF COL17A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
EGR1 COL17A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
GATA2 COL17A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
TRIM28 COL17A1 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
CSNK2A1 COL17A1 22135298 phosphorylation N/A PhosphoSite
ITGB4 COL17A1 25361965 interaction type N/A PTMCode2
COL17A1 ITGB4 25361965 interaction type N/A PTMCode2
MACF1 COL17A1 25361965 interaction type N/A PTMCode2
COL17A1 MACF1 25361965 interaction type N/A PTMCode2
PPL COL17A1 25361965 interaction type N/A PTMCode2
COL17A1 PPL 25361965 interaction type N/A PTMCode2
COL17A1 DSP 25361965 interaction type N/A PTMCode2
DSP COL17A1 25361965 interaction type N/A PTMCode2
COL17A1 CTNND1 25361965 interaction type N/A PTMCode2
CTNND1 COL17A1 25361965 interaction type N/A PTMCode2
COL17A1 ITGA6 25361965 interaction type N/A PTMCode2
ITGA6 COL17A1 25361965 interaction type N/A PTMCode2

Source Target Pmid Interactiontype Methods Database
PPL COL17A1 14525934 25348397 27898060 9521878 N/A two hybrid,physical interaction,two hybrid ComPPI,HPRD,OmniPath
KRT18 COL17A1 10022517 14525934 25348397 27898060 N/A two hybrid,experimental interaction detection,physical interaction,in vitro,two hybrid ComPPI,HPRD,OmniPath
PPIL1 COL17A1 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
CTNND1 COL17A1 10321838 14525934 25348397 27898060 N/A two hybrid,experimental interaction detection,physical interaction,in vitro,two hybrid ComPPI,HPRD,OmniPath
PLOD3 COL17A1 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
PNKP COL17A1 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
ACTN4 COL17A1 11739652 14525934 25348397 N/A two hybrid,experimental interaction detection,physical interaction,in vivo,two hybrid ComPPI,HPRD
ACTN1 COL17A1 11739652 14525934 25348397 N/A two hybrid,experimental interaction detection,physical interaction,in vivo,two hybrid ComPPI,HPRD
CDH1 COL17A1 25348397 N/A physical interaction ComPPI
CLSTN1 COL17A1 12421765 14525934 25348397 N/A two hybrid,two hybrid ComPPI,HPRD
PLEC COL17A1 12482924 14525934 25348397 N/A two hybrid,experimental interaction detection,in vitro,two hybrid ComPPI,HPRD
UBQLN2 COL17A1 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
EGFR COL17A1 24189400 24234451 25348397 association physical interaction,tandem affinity purification ComPPI,IntAct
ITGA6 COL17A1 11739652 14525934 25348397 9500991 N/A two hybrid,experimental interaction detection,in vivo,two hybrid ComPPI,HPRD
ITGB4 COL17A1 14525934 14668477 25348397 9660880 N/A two hybrid,experimental interaction detection,physical interaction,in vivo,two hybrid ComPPI,HPRD
COL17A1 LAD1 14525934 25348397 27898060 9665393 N/A experimental interaction detection,in vitro ComPPI,HPRD,OmniPath
COL17A1 DSP 12482924 14525934 25348397 N/A two hybrid,experimental interaction detection,in vitro,two hybrid ComPPI,HPRD
COL17A1 DST 10637308 12482924 14525934 25348397 N/A experimental interaction detection,physical interaction,two hybrid ComPPI,HPRD
COL17A1 WHRN 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
CSTF2T COL17A1 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
COL17A1 COL17A1 10637308 14525934 8662839 N/A experimental interaction detection,two hybrid HPRD
PLK1 COL17A1 17545155 27898060 N/A N/A OmniPath
CSNK2A1 COL17A1 17545155 27898060 N/A N/A OmniPath

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