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GENE：RBM39

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol RBM39
FullNmae RNA binding motif protein 39
LocusType gene with protein product
Status Approved
HGNC_id HGNC:15923
EnsembleID ENSG00000131051
Uniprot Q14498

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
RBM39 autosis 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature

Go Annotation:

GeneSymbol Go id
RBM39 GO:0003723,GO:0005515,GO:0005654,GO:0005654,GO:0006396,GO:0006397,GO:0008380,GO:0015630,GO:0016607,GO:0016607,GO:0032991,GO:0034451,GO:0048024,GO:0048024,GO:0050733,GO:1990446

Protein-Protein Interaction(String):

Gene-Drug Network:

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
RELA RBM39 18753212 23180781 physical association pull down InnateDB
RBM39 RBM39 18753212 23180781 physical association anti tag coimmunoprecipitation InnateDB
EZH2 RBM39 23180781 24457600 physical association anti tag coimmunoprecipitation InnateDB
SUZ12 RBM39 23180781 24457600 physical association anti tag coimmunoprecipitation InnateDB
EED RBM39 23180781 24457600 physical association anti tag coimmunoprecipitation InnateDB
RNF2 RBM39 23180781 24457600 physical association anti tag coimmunoprecipitation InnateDB
SRPK1 RBM39 23180781 23602568 phosphorylation reaction protein kinase assay InnateDB
SRPK2 RBM39 23180781 23602568 phosphorylation reaction protein kinase assay InnateDB

Source Target Pmid Interactiontype Methods Database
ETS1 RBM39 18971253 20019798 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
HIF1A RBM39 18971253 19828020 trascriptional regulation,stimulation chromatin immunoprecipitation array,inferred by curator TFlink
MYC RBM39 12747840 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
FOXP3 RBM39 20554955 trascriptional regulation,stimulation chromatin immunoprecipitation array TFlink
SMARCA4 RBM39 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CEBPA RBM39 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF RBM39 18971253 trascriptional regulation,stimulation inferred by curator TFlink
E2F4 RBM39 18971253 trascriptional regulation,stimulation inferred by curator TFlink
EGR1 RBM39 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOXA1 RBM39 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOXP1 RBM39 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOS RBM39 18971253 trascriptional regulation,stimulation inferred by curator TFlink
HNF4A RBM39 18971253 trascriptional regulation,stimulation inferred by curator TFlink
RUNX1 RBM39 18971253 trascriptional regulation,stimulation inferred by curator TFlink
SPI1 RBM39 18971253 trascriptional regulation,stimulation inferred by curator TFlink
TAL1 RBM39 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS00005651EE RBM39 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS0000170CF4 RBM39 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS0000096022 RBM39 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00002A71AD RBM39 24374217 25416803 mrna cleavage,inhibition clip TarBase
URS000013E79D RBM39 24374217 25416803 mrna cleavage,inhibition clip TarBase

Source Target Pmid Interactiontype Methods Database
ABL1 RBM39 22135298 phosphorylation N/A PhosphoSite

Source Target Pmid Interactiontype Methods Database
GOLGA2 RBM39 25348397 N/A physical interaction ComPPI
BCAS2 RBM39 25348397 N/A physical interaction ComPPI
SNW1 RBM39 20467437 24234451 25348397 association anti bait coimmunoprecipitation,physical interaction ComPPI,IntAct
CDC5L RBM39 20467437 24234451 25348397 association anti bait coimmunoprecipitation,physical interaction ComPPI,IntAct
SAP30BP RBM39 22365833 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
SAP18 RBM39 22365833 24234451 25348397 25416956 physical association two hybrid,physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
DDX21 RBM39 25348397 N/A physical interaction ComPPI
ZBTB22 RBM39 25348397 N/A physical interaction ComPPI
PCBP1 RBM39 17389360 24234451 25348397 physical association anti bait coimmunoprecipitation,pull down,physical interaction ComPPI,IntAct
KRTAP12-2 RBM39 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
SNRPD1 RBM39 25348397 N/A physical interaction ComPPI
GABARAPL2 RBM39 20562859 24234451 25348397 association anti tag coimmunoprecipitation ComPPI,IntAct
RAN RBM39 25348397 N/A physical interaction ComPPI
MAP1LC3B RBM39 20562859 24234451 25348397 association anti tag coimmunoprecipitation ComPPI,IntAct
SF3B4 RBM39 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
KHDRBS2 RBM39 25348397 N/A physical interaction ComPPI
PHC2 RBM39 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
INO80B RBM39 25348397 N/A physical interaction ComPPI
FAM200A RBM39 25348397 N/A physical interaction ComPPI
RRS1 RBM39 25348397 N/A physical interaction ComPPI
HNRNPH2 RBM39 22365833 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
DDIT4L RBM39 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
SREK1IP1 RBM39 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
EZH2 RBM39 25348397 N/A physical interaction ComPPI
SF3A2 RBM39 17332742 24234451 25348397 physical association affinity chromatography technology,physical interaction ComPPI,IntAct
REL RBM39 25348397 N/A physical interaction ComPPI
SNRNP70 RBM39 25348397 N/A physical interaction ComPPI
SND1 RBM39 25348397 N/A physical interaction ComPPI
JUN RBM39 11704680 14525934 24234451 25348397 25609649 association anti bait coimmunoprecipitation,experimental interaction detection,physical interaction,in vitro ComPPI,HPRD,IntAct
COPS5 RBM39 25348397 N/A physical interaction ComPPI
RBM39 ESR2 11704680 14525934 25348397 N/A experimental interaction detection,physical interaction,in vitro ComPPI,HPRD
RBM39 NCOA6 11704680 14525934 25348397 N/A two hybrid,experimental interaction detection,in vitro,two hybrid ComPPI,HPRD
RBM39 PGR 14525934 15694343 25348397 N/A experimental interaction detection,physical interaction,in vitro ComPPI,HPRD
RBM39 ESR1 11704680 14525934 21182205 24234451 25348397 association affinity chromatography technology,cosedimentation through density gradient,experimental interaction detection,physical interaction,in vitro ComPPI,HPRD,IntAct
RBM39 DDX39B 14525934 14667819 25348397 N/A two hybrid,two hybrid ComPPI,HPRD
RBM39 HNRNPA1 25348397 N/A physical interaction ComPPI
RBM39 CDK9 25348397 N/A physical interaction ComPPI
RBM39 SRRM2 25348397 N/A physical interaction ComPPI
RBM39 H1-2 25348397 N/A physical interaction ComPPI
RBM39 CTNNBL1 25348397 N/A physical interaction ComPPI
RBM39 TADA2A 25348397 N/A physical interaction ComPPI
RBM39 UBC 25348397 N/A physical interaction ComPPI
RBM39 MME 17342744 24234451 25348397 association anti bait coimmunoprecipitation,physical interaction ComPPI,IntAct
RBM39 HDAC5 25348397 N/A physical interaction ComPPI
RBM39 RPS2 25348397 N/A physical interaction ComPPI
RBM39 RPS3 25348397 N/A physical interaction ComPPI
RBM39 ACIN1 25348397 N/A physical interaction ComPPI
RBM39 SNRNP200 25348397 N/A physical interaction ComPPI
RBM39 CDK12 25348397 N/A physical interaction ComPPI
RBM39 SF3B1 25348397 N/A physical interaction ComPPI
RBM39 RBM25 22365833 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
RBM39 PNN 25348397 N/A physical interaction ComPPI
RBM39 U2AF2 22365833 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
RBM39 PCBP3 25348397 N/A physical interaction ComPPI
RBM39 TRA2B 25348397 N/A physical interaction ComPPI
RBM39 LUC7L2 25348397 N/A physical interaction ComPPI
RBM39 SRSF7 25348397 N/A physical interaction ComPPI
RBM39 SRSF1 25348397 N/A physical interaction ComPPI
RBM39 HNRNPU 25348397 N/A physical interaction ComPPI
RBM39 XRCC5 25348397 N/A physical interaction ComPPI
RBM39 XRCC6 25348397 N/A physical interaction ComPPI
RBM39 IRF2BP2 25348397 N/A physical interaction ComPPI
RBM39 RPS13 25348397 N/A physical interaction ComPPI
RBM39 RPL27A 25348397 N/A physical interaction ComPPI
RBM39 IRF2BPL 25348397 N/A physical interaction ComPPI
RBM39 HDGF 21907836 24234451 25348397 association physical interaction,tandem affinity purification ComPPI,IntAct
RBM39 SIRT7 25348397 N/A physical interaction ComPPI
RBM39 TCF3 25348397 N/A physical interaction ComPPI
RBM39 NR2C1 25348397 N/A physical interaction ComPPI
RBM39 CUL3 25348397 N/A physical interaction ComPPI
RBM39 CUL1 25348397 N/A physical interaction ComPPI
RBM39 CAND1 25348397 N/A physical interaction ComPPI
RBM39 APP 25348397 N/A physical interaction ComPPI
RBM39 SMU1 25348397 N/A physical interaction ComPPI
RBM39 DDX3X 25348397 N/A physical interaction ComPPI
RBM39 PLRG1 25348397 N/A physical interaction ComPPI
RBM39 SNU13 25348397 N/A physical interaction ComPPI
RBM39 USP39 25348397 N/A physical interaction ComPPI
RBM39 PRPF19 25348397 N/A physical interaction ComPPI
RBM39 RALY 25348397 N/A physical interaction ComPPI
RBM39 TOP1 25348397 N/A physical interaction ComPPI
RBM39 GPATCH1 25348397 N/A physical interaction ComPPI
RBM39 ILF3 25348397 N/A physical interaction ComPPI
RBM39 SEPTIN7 25348397 N/A physical interaction ComPPI
RBM39 TRMT112 25348397 N/A physical interaction ComPPI
RBM39 UTP14A 25348397 N/A physical interaction ComPPI
RBM39 S100A9 25348397 N/A physical interaction ComPPI
RBM39 RBM14 25348397 N/A physical interaction ComPPI
RBM39 FLNA 25348397 N/A physical interaction ComPPI
RBM39 BARD1 25348397 N/A physical interaction ComPPI
RBM39 MDC1 25348397 N/A physical interaction ComPPI
RBM39 MAGOH 23084401 24234451 25348397 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
RBM39 CHERP 22365833 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
RBM39 RBM23 22365833 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
RBM39 PRPF3 22365833 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
RBM39 NKAP 22365833 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
RBM39 TOE1 22365833 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
RBM39 TTC14 22365833 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
RBM39 ZCCHC10 22365833 24234451 25348397 25416956 physical association two hybrid,physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
RBM39 RNF113A 22365833 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
RBM39 SRPK2 22365833 23602568 24234451 25348397 25416956 phosphorylation reaction,association,physical association two hybrid,physical interaction,two hybrid array,protein kinase assay,tandem affinity purification,bimolecular fluorescence complementation,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
RBM39 AICDA 25348397 N/A physical interaction ComPPI
RBM39 SRPK1 23602568 24234451 25348397 phosphorylation reaction,association physical interaction,protein kinase assay,tandem affinity purification ComPPI,IntAct
RBM39 CLK2 23602568 24234451 25348397 25416956 association,physical association physical interaction,two hybrid array,tandem affinity purification,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
RBM39 SRPK3 23602568 24234451 25348397 association physical interaction,tandem affinity purification ComPPI,IntAct
RBM39 TARDBP 25348397 N/A physical interaction ComPPI
RBM39 RPA3 25348397 N/A physical interaction ComPPI
RBM39 RPA2 25348397 N/A physical interaction ComPPI
RBM39 WWOX 25348397 N/A physical interaction ComPPI
RBM39 SPRTN 25348397 N/A physical interaction ComPPI
RBM39 TP53 25348397 N/A physical interaction ComPPI
RBM39 SDCBP 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
RBM39 SP100 25348397 N/A physical interaction ComPPI
RBM39 MLX 25348397 N/A physical interaction ComPPI
RBM39 SRSF11 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
RBM39 PPIG 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
RBM39 KHDC4 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
RBM39 ARL6IP4 25348397 N/A physical interaction ComPPI
RBM39 BANP 25348397 N/A physical interaction ComPPI
RBM39 THAP1 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
RBM39 NKAPD1 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
RBM39 HOMEZ 25348397 N/A physical interaction ComPPI
RBM39 AK8 24234451 25348397 25416956 physical association physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid ComPPI,IntAct
RBM39 NXF1 25348397 N/A physical interaction ComPPI
RBM39 CUL7 25348397 N/A physical interaction ComPPI
RBM39 OBSL1 25348397 N/A physical interaction ComPPI
RBM39 SUZ12 25348397 N/A physical interaction ComPPI
RBM39 EED 25348397 N/A physical interaction ComPPI
RBM39 RNF2 25348397 N/A physical interaction ComPPI
RBM39 HSPB1 24234451 25277244 25348397 physical association reverse ras recruitment system,physical interaction ComPPI,IntAct
RBM39 PNISR 25348397 N/A physical interaction ComPPI
RBM39 RNPS1 25348397 N/A physical interaction ComPPI
RBM39 SON 25348397 N/A physical interaction ComPPI
RBM39 SREK1 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
RBM39 SFN 25348397 N/A physical interaction ComPPI
RBM39 NTRK1 25348397 N/A physical interaction ComPPI
RBM39 CLK1 25348397 N/A physical interaction ComPPI
RBM39 AHSA1 25348397 N/A physical interaction ComPPI
RBM39 SEC16A 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
RBM39 LAP3 25348397 N/A physical interaction ComPPI
RBM39 KMT2E 25348397 N/A physical interaction ComPPI
RBM39 CRBN 25348397 N/A physical interaction ComPPI
RBM39 ZNF746 25348397 N/A physical interaction ComPPI
RBM39 EGFR 25348397 N/A physical interaction ComPPI
RBM39 JMJD6 24234451 24498420 25348397 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
RBM39 NCL 25348397 N/A physical interaction ComPPI
RBM39 MTNR1A 24234451 25348397 26514267 physical association two hybrid,physical interaction ComPPI,IntAct
RBM39 TRIM25 25348397 N/A physical interaction ComPPI
RBM39 MCPH1 25348397 N/A physical interaction ComPPI
RBM39 HNRNPL 25348397 N/A physical interaction ComPPI
RBM39 MED19 15175163 24234451 25348397 association anti tag coimmunoprecipitation ComPPI,IntAct
RBM39 MED10 15175163 24234451 25348397 association anti tag coimmunoprecipitation ComPPI,IntAct
RBM39 MED29 15175163 24234451 25348397 association anti tag coimmunoprecipitation ComPPI,IntAct
RBM39 CTNNB1 20195357 24234451 25348397 physical association display technology ComPPI,IntAct
RBM39 GABARAPL1 20562859 24234451 25348397 association anti tag coimmunoprecipitation ComPPI,IntAct
RBM39 GABARAP 20562859 24234451 25348397 association anti tag coimmunoprecipitation ComPPI,IntAct
RBM39 MYC 21150319 24234451 25348397 association tandem affinity purification ComPPI,IntAct
RBM39 PTBP3 22575643 24234451 25348397 association anti bait coimmunoprecipitation ComPPI,IntAct
RBM39 MCM7 23764002 24234451 25348397 association anti bait coimmunoprecipitation ComPPI,IntAct
RBM39 L3MBTL1 24234451 25348397 27705803 association tandem affinity purification ComPPI,IntAct
RBM39 LRRK2 24234451 24725412 25348397 association tandem affinity purification ComPPI,IntAct
RBM39 SF1 24234451 25348397 26420826 association anti bait coimmunoprecipitation ComPPI,IntAct
RBM39 CSNK2A1 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
RBM39 DVL3 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
RBM39 CSNK2B 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
RBM39 POU6F2 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
RBM39 SRRM4 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
RBM39 BCAR1 24234451 25348397 28007913 association anti bait coimmunoprecipitation ComPPI,IntAct
PRPF40A RBM39 22365833 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
VTN RBM39 25348397 N/A physical interaction ComPPI
RPA1 RBM39 25348397 N/A physical interaction ComPPI
SEPTIN2 RBM39 25348397 N/A physical interaction ComPPI
SRRM1 RBM39 25348397 N/A physical interaction ComPPI
EIF4A3 RBM39 23084401 24234451 25348397 association anti tag coimmunoprecipitation ComPPI,IntAct
RPS14 RBM39 25348397 N/A physical interaction ComPPI
PRPF38A RBM39 22365833 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
DDX41 RBM39 24234451 25348397 25920683 association anti tag coimmunoprecipitation ComPPI,IntAct
RRP7A RBM39 25348397 N/A physical interaction ComPPI
VIM RBM39 24234451 30021884 physical association cross-linking study IntAct
RBM39 RELA 18753212 27898060 N/A N/A OmniPath

Source Target Pmid Interactiontype Methods Database
URS00009AEE68 RBM39 27087310 direct interaction,inhibition N/A NPInter

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