Gene Information gene info

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GENE：SYNPO

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol SYNPO
FullNmae synaptopodin
LocusType gene with protein product
Status Approved
HGNC_id HGNC:30672
EnsembleID ENSG00000171992
Uniprot Q8N3V7

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
SYNPO autosis 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature

Go Annotation:

GeneSymbol Go id
SYNPO GO:0001725,GO:0003779,GO:0003779,GO:0005515,GO:0005634,GO:0005829,GO:0005886,GO:0005923,GO:0014069,GO:0015629,GO:0015629,GO:0015629,GO:0030018,GO:0032233,GO:0043197,GO:0043204,GO:0097444,GO:0098886,GO:0098886,GO:1905355

KEGG Annotation:

GeneSymbol GeneID Pathway Pathway Name
SYNPO hsa:11346 path:hsa04530 Tight junction - Homo sapiens (human)

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
AR SYNPO 20610535 trascriptional regulation,stimulation chromatin immunoprecipitation array TFlink
GATA1 SYNPO 19941826 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
GATA2 SYNPO 19941826 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
YBX1 SYNPO 19151767 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
SMARCA4 SYNPO 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CEBPA SYNPO 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF SYNPO 18971253 trascriptional regulation,stimulation inferred by curator TFlink
E2F1 SYNPO 18971253 trascriptional regulation,stimulation inferred by curator TFlink
EGR1 SYNPO 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOXA1 SYNPO 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOXP1 SYNPO 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOS SYNPO 18971253 trascriptional regulation,stimulation inferred by curator TFlink
HNF4A SYNPO 18971253 trascriptional regulation,stimulation inferred by curator TFlink
ZNF263 SYNPO 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS00002C0FCB SYNPO 22012620 25416803 mrna cleavage,inhibition clip TarBase
URS000003FD55 SYNPO 22012620 25416803 mrna cleavage,inhibition clip TarBase
URS00004818BD SYNPO 22012620 25416803 mrna cleavage,inhibition clip TarBase
URS000007A060 SYNPO 22012620 25416803 mrna cleavage,inhibition clip TarBase
URS00004AC389 SYNPO 22012620 25416803 mrna cleavage,inhibition clip TarBase
URS000016D2D4 SYNPO 22012620 25416803 mrna cleavage,inhibition clip TarBase
URS00001CF056 SYNPO 23313552 24906430 25416803 27292025 27418678 mrna cleavage,inhibition clip TarBase

Source Target Pmid Interactiontype Methods Database
SYNPO MAGI1 25361965 interaction type N/A PTMCode2
MAGI1 SYNPO 25361965 interaction type N/A PTMCode2

Source Target Pmid Interactiontype Methods Database
NCK2 SYNPO 25348397 N/A physical interaction ComPPI
GNAI3 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
MAPRE1 SYNPO 25348397 N/A physical interaction ComPPI
PPL SYNPO 25348397 N/A physical interaction ComPPI
ARPC3 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
CDC5L SYNPO 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
SGF29 SYNPO 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
SH3KBP1 SYNPO 25348397 N/A physical interaction ComPPI
PACSIN3 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
PPP1CC SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
BAG3 SYNPO 25348397 N/A physical interaction ComPPI
LZTS2 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
CFL1 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
ACTB SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
YWHAG SYNPO 20936779 24234451 25348397 physical association physical interaction,two hybrid pooling approach,two hybrid fragment pooling approach ComPPI,IntAct
PPP1CB SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
PPP1R9A SYNPO 25348397 N/A physical interaction ComPPI
CD44 SYNPO 25348397 N/A physical interaction ComPPI
DAB2 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
CD59 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
NCK1 SYNPO 25348397 N/A physical interaction ComPPI
GRB2 SYNPO 12577067 24234451 25348397 association pull down ComPPI,IntAct
TPM2 SYNPO 25348397 N/A physical interaction ComPPI
NONO SYNPO 21988832 24234451 25348397 physical association two hybrid,physical interaction ComPPI,IntAct
FLNA SYNPO 25348397 N/A physical interaction ComPPI
PPP1R12A SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
JUP SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
ACTN4 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
YWHAZ SYNPO 25348397 N/A physical interaction ComPPI
RRAS2 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
ACTN1 SYNPO 24234451 25348397 26496610 30021884 association,physical association anti tag coimmunoprecipitation,cross-linking study,physical interaction ComPPI,IntAct
APC SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
MAGI1 SYNPO 12042308 14525934 25348397 N/A experimental interaction detection,physical interaction,in vitro,in vivo ComPPI,HPRD
PPP1CA SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
PLEC SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
AKAP2 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
PHLDB2 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
HMGB2 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
TNFAIP1 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
HNRNPL SYNPO 25348397 N/A physical interaction ComPPI
PPP1R9B SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
IQGAP1 SYNPO 25348397 N/A physical interaction ComPPI
ADD3 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
AFAP1 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
PDLIM7 SYNPO 25348397 N/A physical interaction ComPPI
SPTAN1 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
DAPK3 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
MYO18A SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SORBS2 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
CAMK2G SYNPO 25348397 N/A physical interaction ComPPI
DNAJC7 SYNPO 25348397 N/A physical interaction ComPPI
CLTC SYNPO 25348397 N/A physical interaction ComPPI
AP2A1 SYNPO 25348397 N/A anti tag coimmunoprecipitation,physical interaction ComPPI
EPS15 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SPTBN1 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SPTBN2 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
CDK2 SYNPO 25348397 N/A physical interaction ComPPI
STON2 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
ANXA2 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
CTTN SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
RAF1 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
OCRL SYNPO 24234451 25107275 25348397 association anti tag coimmunoprecipitation ComPPI,IntAct
RAI14 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
ACTR3 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
FLNB SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
MYO6 SYNPO 25348397 N/A physical interaction ComPPI
CORO2A SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
CLIC1 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
ARPC1B SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SVIL SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
WNK1 SYNPO 20936779 24234451 25348397 physical association two hybrid pooling approach,two hybrid fragment pooling approach ComPPI,IntAct
AP2M1 SYNPO 25348397 N/A physical interaction ComPPI
FLII SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
LRRFIP2 SYNPO 25348397 N/A physical interaction ComPPI
TRIM25 SYNPO 25348397 N/A physical interaction ComPPI
GNAS SYNPO 25348397 N/A physical interaction ComPPI
WDR1 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
TWF1 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
CGN SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
GAK SYNPO 25348397 N/A physical interaction ComPPI
CLINT1 SYNPO 25348397 N/A physical interaction ComPPI
GNB2 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
ARHGAP21 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
CFL2 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SSH2 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
GNAI2 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
NAP1L4 SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
MPRIP SYNPO 25348397 N/A physical interaction ComPPI
MYO5B SYNPO 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO MOV10 25348397 N/A physical interaction ComPPI
SYNPO NXF1 25348397 N/A physical interaction ComPPI
SYNPO ANXA2P2 25348397 N/A physical interaction ComPPI
SYNPO CAPZA2 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO CAPZB 25348397 N/A anti tag coimmunoprecipitation,physical interaction ComPPI
SYNPO CLTA 25348397 N/A physical interaction ComPPI
SYNPO CLTB 25348397 N/A physical interaction ComPPI
SYNPO CPM 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO CSNK1G3 25348397 N/A physical interaction ComPPI
SYNPO DBN1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO DSG2 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO FLOT2 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO GNAS 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO GNAS 25348397 N/A physical interaction ComPPI
SYNPO GNB1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO GSN 25348397 N/A physical interaction ComPPI
SYNPO ITPR1 25348397 N/A physical interaction ComPPI
SYNPO ITPR3 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO ABLIM1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO LMO7 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO MYO1B 25348397 N/A physical interaction ComPPI
SYNPO MYO1C 25348397 N/A physical interaction ComPPI
SYNPO MYO1E 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO MYO5A 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO PPP1R12B 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO PALM 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO PIK3C2A 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO HLTF 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO TMOD1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO TPM1 25348397 N/A physical interaction ComPPI
SYNPO LUZP1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO GPRC5A 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO ABCG2 25348397 N/A physical interaction ComPPI
SYNPO ARHGAP11A 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO ARHGEF17 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO SEC16A 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO ARPC5 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO ARPC4 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO ACTR2 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO ARPC2 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO FARP1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO FLOT1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO BASP1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO TWF2 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO CENPE 25348397 N/A physical interaction ComPPI
SYNPO MYH9 25348397 N/A physical interaction ComPPI
SYNPO LIMA1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO ANLN 25348397 N/A physical interaction ComPPI
SYNPO MYO5C 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO MYO19 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO CEP162 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO SIPA1L3 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO COBL 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO SPECC1L 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO CORO1C 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO POC1A 25348397 N/A physical interaction ComPPI
SYNPO ZDHHC5 25348397 N/A physical interaction ComPPI
SYNPO SIPA1L1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO ZBTB20 25348397 N/A physical interaction ComPPI
SYNPO TMOD3 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO BMP2K 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO CORO1B 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO INF2 25348397 N/A physical interaction ComPPI
SYNPO CYBRD1 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO ARPC5L 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO NEXN 25348397 N/A physical interaction ComPPI
SYNPO SPECC1 25348397 N/A physical interaction ComPPI
SYNPO PLCD3 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO MISP 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO CD109 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO PPP1R18 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO TMEM201 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
SYNPO TPRN 24234451 25348397 26496610 association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
EEF1D SYNPO 25348397 N/A anti tag coimmunoprecipitation,physical interaction ComPPI

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