Gene Information gene info

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GENE：CLN6

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol CLN6
FullNmae CLN6 transmembrane ER protein
LocusType gene with protein product
Status Approved
HGNC_id HGNC:2077
EnsembleID ENSG00000128973
Uniprot Q9NWW5

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
CLN6 autosis 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature

Go Annotation:

GeneSymbol Go id
CLN6 GO:0001573,GO:0005515,GO:0005730,GO:0005769,GO:0005783,GO:0005783,GO:0005788,GO:0005789,GO:0007040,GO:0007042,GO:0007601,GO:0008203,GO:0016020,GO:0016020,GO:0016020,GO:0030163,GO:0030203,GO:0031987,GO:0035727,GO:0042803,GO:0043231,GO:0045121,GO:0045862,GO:0120146

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
RNF2 CLN6 23180781 24457600 physical association anti tag coimmunoprecipitation InnateDB

Source Target Pmid Interactiontype Methods Database
ETS1 CLN6 18971253 20019798 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
YBX1 CLN6 19151767 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
CEBPA CLN6 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF CLN6 18971253 trascriptional regulation,stimulation inferred by curator TFlink
E2F1 CLN6 18971253 trascriptional regulation,stimulation inferred by curator TFlink
E2F4 CLN6 18971253 trascriptional regulation,stimulation inferred by curator TFlink
EGR1 CLN6 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOS CLN6 18971253 trascriptional regulation,stimulation inferred by curator TFlink
HNF4A CLN6 18971253 trascriptional regulation,stimulation inferred by curator TFlink
MITF CLN6 18971253 trascriptional regulation,stimulation inferred by curator TFlink
TRIM28 CLN6 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS00000F31F4 CLN6 19074876 25416803 mrna cleavage,inhibition array technology TarBase
URS00000B59A2 CLN6 19074876 25416803 mrna cleavage,inhibition array technology TarBase
URS00003D5391 CLN6 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS000005481D CLN6 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00003CF1AD CLN6 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00001FFA8C CLN6 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS000076B539 CLN6 23824327 25416803 mrna cleavage,inhibition clip TarBase

Source Target Pmid Interactiontype Methods Database
CLN6 CLN3 25361965 interaction type N/A PTMCode2
CLN3 CLN6 25361965 interaction type N/A PTMCode2

Source Target Pmid Interactiontype Methods Database
VCP CLN6 25348397 N/A physical interaction ComPPI
LMNA CLN6 25348397 N/A physical interaction ComPPI
BMI1 CLN6 25348397 N/A physical interaction ComPPI
TEX264 CLN6 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
TMEM139 CLN6 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
PTPRO CLN6 25348397 N/A physical interaction ComPPI
ILK CLN6 23455922 24234451 25348397 association physical interaction,tandem affinity purification ComPPI,IntAct
STX1A CLN6 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
RNF2 CLN6 25348397 N/A physical interaction ComPPI
PTPRN CLN6 25348397 N/A physical interaction ComPPI
TRIM25 CLN6 25348397 N/A physical interaction ComPPI
CD79A CLN6 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
GJA8 CLN6 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
CLDN7 CLN6 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
DERL1 CLN6 25348397 N/A physical interaction ComPPI
EBAG9 CLN6 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
IFT27 CLN6 24234451 25348397 27173435 association anti tag coimmunoprecipitation ComPPI,IntAct
LIME1 CLN6 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
KIR2DL3 CLN6 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
CREB3L1 CLN6 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
RIPK4 CLN6 24234451 25348397 26972000 association anti tag coimmunoprecipitation ComPPI,IntAct
GORAB CLN6 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
CISD2 CLN6 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
CLN6 CYBC1 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
CLN6 LRRC25 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
CLN6 CPLX4 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
CLN6 ARL13B 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
CLN6 FNDC9 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
CLN6 FAM209A 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
CLN6 SLC30A4 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
CLN6 CLEC10A 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
HSCB CLN6 24234451 25348397 28380382 association anti bait coimmunoprecipitation ComPPI,IntAct
CLN6 MMGT1 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 CLN6 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 ABCC1 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 MTOR 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 MPDU1 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 RNF5 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 ICMT 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 TM9SF3 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 ERLIN1 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 AUP1 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 CHP1 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 STT3A 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 DDOST 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 YIF1A 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 SLC35B2 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 NDUFA13 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 XPO7 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 SLC7A5 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 SCAMP3 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 TELO2 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 SMPD4 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 XPO1 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 ERLIN2 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 GCN1 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 ATP2A2 24234451 30177828 association anti tag coimmunoprecipitation IntAct
CLN6 SLC16A1 24234451 30177828 association anti tag coimmunoprecipitation IntAct

Visualization










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