GENE：SNX16
GeneInfo:
| GeneAttribute | GeneDescription |
|---|---|
| GeneSymbol | SNX16 |
| FullNmae | sorting nexin 16 |
| LocusType | gene with protein product |
| Status | Approved |
| HGNC_id | HGNC:14980 |
| EnsembleID | ENSG00000104497 |
| Uniprot | P57768 |
Protein Structure:
Gene Description in Publicaton:
| GeneSymbol | CellDeathType | PMID | Description | GeneType |
|---|---|---|---|---|
| SNX16 | lysosomal_cd | 36341760 | 220 lysosome-dependent cell death genes. | retulator signature |
| SNX16 | lysosomal_cd | 36341760 | The PCD-related genes contained the key regulatory genes of twelve PCD patterns which is mentioned above. Genes were collected from GSEA gene sets, KEGG, review articles, and manual collation [10]. The ultimate gene list was the concatenation regulatory genes of twelve PCD patterns. | regulator signature |
| SNX16 | autosis | 38538696 | The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) | retulator signature |
Go Annotation:
| GeneSymbol | Go id |
|---|---|
| SNX16 | GO:0005764,GO:0005769,GO:0005769,GO:0005770,GO:0005770,GO:0005829,GO:0006622,GO:0006622,GO:0008333,GO:0008333,GO:0010008,GO:0031313,GO:0031901,GO:0031902,GO:0035091,GO:0035091,GO:0042802,GO:0043231,GO:0045022,GO:0045022 |
Protein-Protein Interaction(String):
Signalink 3.0 modificators
| Source | Target | Pmid | Interactiontype | Methods | Database |
|---|---|---|---|---|---|
| ETS1 | SNX16 | 18971253 20019798 | trascriptional regulation,stimulation | inferred by curator,chromatin immunoprecipitation assay | TFlink |
| GATA1 | SNX16 | 19941826 | trascriptional regulation,stimulation | chromatin immunoprecipitation assay | TFlink |
| FOXP3 | SNX16 | 20554955 | trascriptional regulation,stimulation | chromatin immunoprecipitation array | TFlink |
| PRDM14 | SNX16 | 18971253 20953172 | trascriptional regulation,stimulation | inferred by curator,chromatin immunoprecipitation assay | TFlink |
| SMARCA4 | SNX16 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| CEBPA | SNX16 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| CTCF | SNX16 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| E2F1 | SNX16 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| E2F4 | SNX16 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| EGR1 | SNX16 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| FOXP1 | SNX16 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| FOS | SNX16 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| GATA2 | SNX16 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| HNF4A | SNX16 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| IGF1R | SNX16 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| MITF | SNX16 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| TAL1 | SNX16 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| TP53 | SNX16 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| ZNF263 | SNX16 | 18971253 | trascriptional regulation,stimulation | inferred by curator | TFlink |
| Source | Target | Pmid | Interactiontype | Methods | Database |
|---|---|---|---|---|---|
| URS000016FF9C | SNX16 | 20371350 25416803 | mrna cleavage,inhibition | nucleotide sequence identification | TarBase |
| URS0000427B68 | SNX16 | 20371350 21572407 23446348 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS00000821E0 | SNX16 | 22815788 25416803 | mrna cleavage,inhibition | array technology,quantitative reverse transcription pcr | TarBase |
| URS000040EE1D | SNX16 | 20371350 21572407 22815788 23446348 25416803 | mrna cleavage,inhibition | array technology,quantitative reverse transcription pcr,clip | TarBase |
| URS00000DDD35 | SNX16 | 22815788 25416803 | mrna cleavage,inhibition | array technology,quantitative reverse transcription pcr | TarBase |
| URS00003D8730 | SNX16 | 20371350 21572407 23446348 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS0000306C70 | SNX16 | 20371350 21572407 23446348 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS00000D2680 | SNX16 | 20371350 21572407 23446348 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS00000F0F49 | SNX16 | 20371350 21572407 23446348 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS000041CB9C | SNX16 | 20371350 21572407 23446348 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS0000171CD1 | SNX16 | 20371350 21572407 23446348 25416803 | mrna cleavage,inhibition | clip | TarBase |
| URS000007D64A | SNX16 | 20371350 21572407 23446348 25416803 | mrna cleavage,inhibition | clip | TarBase |