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GENE：TRIM13

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol TRIM13
FullNmae tripartite motif containing 13
LocusType gene with protein product
Status Approved
HGNC_id HGNC:9976
EnsembleID ENSG00000204977
Uniprot O60858

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
TRIM13 immunogenic 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature
TRIM13 autosis 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature
TRIM13 autophagy 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature
TRIM13 autophagy 36341760 The PCD-related genes contained the key regulatory genes of twelve PCD patterns which is mentioned above. Genes were collected from GSEA gene sets, KEGG, review articles, and manual collation [10]. The ultimate gene list was the concatenation regulatory genes of twelve PCD patterns. regulator signature

Go Annotation:

GeneSymbol Go id
TRIM13 GO:0003713,GO:0004842,GO:0005515,GO:0005737,GO:0005789,GO:0005789,GO:0008270,GO:0009653,GO:0016239,GO:0016239,GO:0016567,GO:0030433,GO:0030433,GO:0032897,GO:0043123,GO:0043123,GO:0043123,GO:0043161,GO:0044790,GO:0045087,GO:0045087,GO:0045893,GO:0051092,GO:0051092,GO:0051865,GO:0061630,GO:0061630,GO:0061659,GO:0097038

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
TRIM13 CASP8 26192618 26587781 interaction type N/A ACSN
TRIM13 ATG5 26192618 26587781 interaction type N/A ACSN
TRIM13 FADD 26192618 26587781 interaction type N/A ACSN

Source Target Pmid Interactiontype Methods Database
YBX1 TRIM13 19151767 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
SMARCA4 TRIM13 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF TRIM13 18971253 trascriptional regulation,stimulation inferred by curator TFlink
E2F4 TRIM13 18971253 trascriptional regulation,stimulation inferred by curator TFlink
EGR1 TRIM13 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOXA1 TRIM13 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS000003ABC4 TRIM13 19088304 25416803 mrna cleavage,inhibition array technology TarBase
URS00001E3523 TRIM13 23934188 25416803 mrna cleavage,inhibition array technology,western blot,quantitative reverse transcription pcr,miRNA interference luciferase reporter assay TarBase
URS00004A6E26 TRIM13 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS00001CF056 TRIM13 21572407 22012620 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS000005D4F5 TRIM13 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS00004818BD TRIM13 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS00001A405B TRIM13 22100165 25416803 mrna cleavage,inhibition clip TarBase
URS0000427B68 TRIM13 21572407 22012620 23446348 23824327 25416803 27418678 mrna cleavage,inhibition clip TarBase
URS00004719AB TRIM13 20371350 21572407 22012620 23446348 23824327 25416803 27418678 mrna cleavage,inhibition clip TarBase
URS00004B83FE TRIM13 23446348 25416803 mrna cleavage,inhibition clip TarBase
URS00000D2680 TRIM13 21572407 23446348 25416803 mrna cleavage,inhibition clip TarBase
URS00004283FE TRIM13 21572407 23446348 25416803 mrna cleavage,inhibition clip TarBase
URS000040FA88 TRIM13 22012620 25416803 mrna cleavage,inhibition clip TarBase
URS00000B7E30 TRIM13 21572407 22012620 25416803 mrna cleavage,inhibition clip TarBase
URS0000077AED TRIM13 20371350 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00003677B2 TRIM13 20371350 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS000028DE3F TRIM13 20371350 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS000075A760 TRIM13 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS00002152A8 TRIM13 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS00001D6605 TRIM13 23824327 25416803 27418678 mrna cleavage,inhibition clip TarBase
URS00001C770D TRIM13 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS00000AB32B TRIM13 23824327 25416803 27418678 mrna cleavage,inhibition clip TarBase
URS00002F5FEE TRIM13 25416803 25497012 mrna cleavage,inhibition western blot,quantitative reverse transcription pcr,miRNA interference luciferase reporter assay TarBase
URS00004F24A9 TRIM13 25416803 27418678 mrna cleavage,inhibition clip TarBase
URS00001EE123 TRIM13 25416803 27418678 mrna cleavage,inhibition clip TarBase
URS000037E170 TRIM13 25416803 27418678 mrna cleavage,inhibition clip TarBase

Source Target Pmid Interactiontype Methods Database
GMCL1 TRIM13 25348397 N/A physical interaction ComPPI
TRAF6 TRIM13 25348397 N/A physical interaction ComPPI
VCP TRIM13 25348397 N/A physical interaction ComPPI
CALM1 TRIM13 25348397 N/A physical interaction ComPPI
UBE2D2 TRIM13 25348397 N/A physical interaction ComPPI
ARHGDIA TRIM13 25348397 N/A physical interaction ComPPI
CANX TRIM13 24234451 25348397 29568061 association proximity-dependent biotin identification ComPPI,IntAct
CKAP4 TRIM13 25348397 N/A physical interaction ComPPI
EVC2 TRIM13 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
SQSTM1 TRIM13 25348397 N/A physical interaction ComPPI
MDM2 TRIM13 25348397 N/A physical interaction ComPPI
ATP2A2 TRIM13 25348397 N/A physical interaction ComPPI
PTPRN TRIM13 25348397 N/A physical interaction ComPPI
AKT1 TRIM13 25348397 N/A physical interaction ComPPI
ROBO2 TRIM13 25348397 N/A physical interaction ComPPI
CACNA1C TRIM13 25348397 N/A physical interaction ComPPI
NPLOC4 TRIM13 25348397 N/A physical interaction ComPPI
TEX28 TRIM13 25348397 N/A physical interaction ComPPI
TMEM216 TRIM13 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
COMMD10 TRIM13 25348397 N/A physical interaction ComPPI
KIR3DL2 TRIM13 25348397 N/A physical interaction ComPPI
LAMP1 TRIM13 24234451 25348397 29568061 association proximity-dependent biotin identification ComPPI,IntAct
DDOST TRIM13 25348397 N/A physical interaction ComPPI
IKBKG TRIM13 25348397 N/A physical interaction ComPPI
GMCL2 TRIM13 25348397 N/A physical interaction ComPPI
TRIM13 ZFYVE1 25348397 N/A physical interaction ComPPI
TRIM13 TCTN2 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
TRIM13 TCTN3 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
TRIM13 TMEM17 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
TRIM13 CTDNEP1 25348397 N/A physical interaction ComPPI
TRIM13 ELOVL2 25348397 N/A physical interaction ComPPI
TRIM13 LRRN2 25348397 N/A physical interaction ComPPI
TRIM13 FAM234B 25348397 N/A physical interaction ComPPI
TRIM13 TRIM13 22829933 24234451 physical association two hybrid IntAct

Source Target Pmid Interactiontype Methods Database
URS0000759DCF TRIM13 14636997 27087310 direct interaction,inhibition N/A NPInter

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