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GENE：VMP1

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol VMP1
FullNmae vacuole membrane protein 1
LocusType gene with protein product
Status Approved
HGNC_id HGNC:29559
EnsembleID ENSG00000062716
Uniprot Q96GC9

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
VMP1 autophagy 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature

Go Annotation:

GeneSymbol Go id
VMP1 GO:0000045,GO:0000045,GO:0000407,GO:0000421,GO:0005515,GO:0005730,GO:0005783,GO:0005783,GO:0005789,GO:0005886,GO:0006914,GO:0006914,GO:0007030,GO:0007566,GO:0012505,GO:0016020,GO:0016240,GO:0017121,GO:0017128,GO:0033116,GO:0034329,GO:0042953,GO:0098609,GO:0140056,GO:1901896,GO:1990456

KEGG Annotation:

GeneSymbol GeneID Pathway Pathway Name
VMP1 hsa:81671 path:hsa04140 Autophagy - animal - Homo sapiens (human)

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
BECN1 VMP1 19056683 23180781 physical association anti tag coimmunoprecipitation InnateDB
TJP1 VMP1 17724469 23180781 physical association anti tag coimmunoprecipitation InnateDB

Source Target Pmid Interactiontype Methods Database
AR VMP1 20610535 trascriptional regulation,stimulation chromatin immunoprecipitation array TFlink
ESR1 VMP1 21878914 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
ETS1 VMP1 20019798 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
GATA3 VMP1 21878914 trascriptional regulation,stimulation chromatin immunoprecipitation assay TFlink
FOXA1 VMP1 18971253 21878914 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
FOXP3 VMP1 20554955 trascriptional regulation,stimulation chromatin immunoprecipitation array TFlink
SMARCA4 VMP1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CEBPA VMP1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF VMP1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
E2F1 VMP1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOS VMP1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
GATA2 VMP1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
HNF4A VMP1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
MITF VMP1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
VDR VMP1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
TP53 VMP1 18971253 trascriptional regulation,stimulation inferred by curator TFlink
GLI3 VMP1 22535956 trascriptional regulation,stimulation inferred by curator TFlink
E2F2 VMP1 N/A trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS000055128B VMP1 22144109 rna interference,inhibition array technology,western blot,miRNA interference luciferase reporter assay miRSponge
URS000055128B VMP1 22144109 24632577 25416803 mrna cleavage,inhibition array technology,western blot,miRNA interference luciferase reporter assay TarBase
URS00001C3AC1 VMP1 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00000C85B2 VMP1 23622248 25416803 mrna cleavage,inhibition clash TarBase
URS00000EC1BE VMP1 20371350 21572407 22927820 23313552 23592263 23706177 24906430 25416803 26701625 27292025 27418678 28735896 mrna cleavage,inhibition clip TarBase
URS00003003B4 VMP1 20371350 21572407 22927820 23313552 23592263 23706177 24906430 25416803 26701625 27292025 27418678 28735896 mrna cleavage,inhibition clip TarBase
URS00001481F9 VMP1 20371350 21572407 22927820 23313552 23592263 23706177 24906430 25416803 26701625 27292025 27418678 28735896 mrna cleavage,inhibition clip TarBase
URS000075BDAA VMP1 20371350 21572407 22927820 23313552 23592263 23706177 24906430 25416803 26701625 27292025 27418678 28735896 mrna cleavage,inhibition clip TarBase
URS000023133F VMP1 19536157 20371350 21572407 22927820 23313552 23446348 23592263 23706177 23824327 24906430 25416803 26701625 27292025 27418678 28735896 mrna cleavage,inhibition clip TarBase
URS0000284586 VMP1 21572407 22927820 23313552 23592263 23706177 24906430 25416803 26701625 27292025 27418678 mrna cleavage,inhibition clip TarBase
URS000017EA6A VMP1 19536157 20371350 21572407 22927820 23313552 23446348 23592263 23706177 23824327 24906430 25416803 26701625 27292025 27418678 28735896 mrna cleavage,inhibition clip TarBase
URS00004505E4 VMP1 19536157 20371350 21572407 22927820 23313552 23446348 23592263 23706177 23824327 24906430 25416803 26701625 27292025 27418678 28735896 mrna cleavage,inhibition clip TarBase
URS00000D5659 VMP1 19536157 20371350 21572407 22927820 23313552 23446348 23592263 23706177 23824327 24906430 25416803 26701625 27292025 27418678 28735896 mrna cleavage,inhibition clip TarBase
URS000031BC7D VMP1 19536157 23313552 23446348 23592263 23824327 25416803 26701625 27418678 28735896 mrna cleavage,inhibition clip TarBase
URS0000028BB8 VMP1 19536157 20371350 21572407 22927820 23313552 23446348 23592263 23706177 23824327 24906430 25416803 26701625 27292025 27418678 28735896 mrna cleavage,inhibition clip TarBase
URS00001AFC71 VMP1 19536157 20371350 21572407 22927820 23313552 23446348 23592263 23706177 23824327 24906430 25416803 26701625 27292025 27418678 28735896 mrna cleavage,inhibition clip TarBase
URS000040780F VMP1 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS00001012BC VMP1 19536157 25416803 mrna cleavage,inhibition clip TarBase
URS000075A611 VMP1 19536157 25416803 mrna cleavage,inhibition clip TarBase
URS000016FD1A VMP1 25416803 26701625 mrna cleavage,inhibition clip TarBase

Source Target Pmid Interactiontype Methods Database
LMNA VMP1 25348397 N/A physical interaction ComPPI
DPEP1 VMP1 25348397 N/A physical interaction ComPPI
HGS VMP1 25348397 N/A physical interaction ComPPI
BECN1 VMP1 23316280 24234451 25348397 association,physical association anti bait coimmunoprecipitation,anti tag coimmunoprecipitation ComPPI,IntAct
PIK3C3 VMP1 23316280 24234451 25348397 association anti bait coimmunoprecipitation ComPPI,IntAct
ELAVL1 VMP1 25348397 N/A physical interaction ComPPI
CDH13 VMP1 25348397 N/A physical interaction ComPPI
FAF2 VMP1 25348397 N/A physical interaction ComPPI
CYB5R3 VMP1 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
TMEM216 VMP1 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
MAS1 VMP1 25348397 N/A physical interaction ComPPI
TJP1 VMP1 17724469 24234451 25348397 27898060 physical association anti bait coimmunoprecipitation,physical interaction,fluorescence microscopy ComPPI,IntAct,OmniPath
ERGIC3 VMP1 24234451 25348397 physical association two hybrid,physical interaction,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
VMP1 KLK11 25348397 N/A physical interaction ComPPI
VMP1 LPAR6 25348397 N/A physical interaction ComPPI
VMP1 TCTN2 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
VMP1 TCTN3 24234451 25348397 26638075 association physical interaction,proximity-dependent biotin identification ComPPI,IntAct
VMP1 SLC39A9 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
VMP1 FAM209A 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
HSCB VMP1 24234451 25348397 28380382 association anti bait coimmunoprecipitation ComPPI,IntAct
VMP1 BECN1 17940279 19056683 23316280 27898060 stimulant N/A OmniPath

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