GeneInfo:
GeneAttribute
GeneDescription
GeneSymbol
ZKSCAN3
FullNmae
zinc finger with KRAB and SCAN domains 3
LocusType
gene with protein product
Status
Approved
HGNC_id
HGNC:13853
EnsembleID
ENSG00000189298
Uniprot
Q9BRR0
Protein Structure:
Gene Description in Publicaton:
GeneSymbol
CellDeathType
PMID
Description
GeneType
ZKSCAN3
autophagy
38538696
The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore)
retulator signature
ZKSCAN3
autophagy
36341760
The PCD-related genes contained the key regulatory genes of twelve PCD patterns which is mentioned above. Genes were collected from GSEA gene sets, KEGG, review articles, and manual collation [10]. The ultimate gene list was the concatenation regulatory genes of twelve PCD patterns.
regulator signature
Go Annotation:
GeneSymbol
Go id
ZKSCAN3
GO:0000122,GO:0000978,GO:0000978,GO:0000981,GO:0001227,GO:0003677,GO:0003682,GO:0003700,GO:0005515,GO:0005634,GO:0005654,GO:0005737,GO:0006357,GO:0006914,GO:0007040,GO:0010507,GO:0043565,GO:0045892,GO:0045893,GO:0046872,GO:2000773
Protein-Protein Interaction(String):
Signalink 3.0 modificators
Source
Target
Pmid
Interactiontype
Methods
Database
AR
ZKSCAN3
20610535
trascriptional regulation,stimulation
chromatin immunoprecipitation array
TFlink
ETS1
ZKSCAN3
18971253
20019798
trascriptional regulation,stimulation
inferred by curator,chromatin immunoprecipitation assay
TFlink
GATA1
ZKSCAN3
19941826
trascriptional regulation,stimulation
chromatin immunoprecipitation assay
TFlink
GATA2
ZKSCAN3
19941826
trascriptional regulation,stimulation
chromatin immunoprecipitation assay
TFlink
YBX1
ZKSCAN3
19151767
trascriptional regulation,stimulation
chromatin immunoprecipitation assay
TFlink
SMARCA4
ZKSCAN3
18971253
trascriptional regulation,stimulation
inferred by curator
TFlink
CTCF
ZKSCAN3
18971253
trascriptional regulation,stimulation
inferred by curator
TFlink
HNF4A
ZKSCAN3
18971253
trascriptional regulation,stimulation
inferred by curator
TFlink
Source
Target
Pmid
Interactiontype
Methods
Database
URS000003ABC4
ZKSCAN3
19088304
25416803
mrna cleavage,inhibition
array technology
TarBase
URS0000365675
ZKSCAN3
23824327
25416803
mrna cleavage,inhibition
clip
TarBase
URS00001FC26E
ZKSCAN3
23824327
25416803
mrna cleavage,inhibition
clip
TarBase
URS000075C4B1
ZKSCAN3
23824327
25416803
mrna cleavage,inhibition
clip
TarBase
URS00000254A6
ZKSCAN3
23824327
25416803
mrna cleavage,inhibition
clip
TarBase
URS000075C1E1
ZKSCAN3
23824327
25416803
mrna cleavage,inhibition
clip
TarBase
URS00002A8BC6
ZKSCAN3
23824327
25416803
mrna cleavage,inhibition
clip
TarBase
URS000032AE90
ZKSCAN3
23824327
25416803
mrna cleavage,inhibition
clip
TarBase
URS00003E5ECC
ZKSCAN3
23824327
25416803
mrna cleavage,inhibition
clip
TarBase
URS000075A760
ZKSCAN3
23824327
25416803
mrna cleavage,inhibition
clip
TarBase
URS00002152A8
ZKSCAN3
23824327
25416803
mrna cleavage,inhibition
clip
TarBase
URS0000137EDE
ZKSCAN3
23824327
25416803
mrna cleavage,inhibition
clip
TarBase
URS000019907A
ZKSCAN3
23824327
25416803
mrna cleavage,inhibition
clip
TarBase
URS00001C770D
ZKSCAN3
23824327
25416803
mrna cleavage,inhibition
clip
TarBase
Source
Target
Pmid
Interactiontype
Methods
Database
LZTS2
ZKSCAN3
24234451
25348397
25416956
physical association
physical interaction,two hybrid array,two hybrid prey pooling approach,validated two hybrid
ComPPI,IntAct
LMNA
ZKSCAN3
24234451
25348397
29568061
association
proximity-dependent biotin identification
ComPPI,IntAct
GRB2
ZKSCAN3
17474147
24234451
25348397
physical association
peptide array
ComPPI,IntAct
MDM4
ZKSCAN3
24234451
25348397
physical association
two hybrid,two hybrid array,two hybrid prey pooling approach
ComPPI,IntAct
TRAF2
ZKSCAN3
24234451
25348397
physical association
two hybrid,two hybrid array,two hybrid prey pooling approach
ComPPI,IntAct
ZNF24
ZKSCAN3
25348397
N/A
physical interaction
ComPPI
ZNF444
ZKSCAN3
25348397
N/A
physical interaction
ComPPI
IHO1
ZKSCAN3
24234451
25348397
physical association
two hybrid,two hybrid array,two hybrid prey pooling approach
ComPPI,IntAct
STK38L
ZKSCAN3
24234451
30108113
association
proximity-dependent biotin identification
IntAct
ZKSCAN3
ULK1
23434374
27898060
N/A
N/A
OmniPath
ZKSCAN3
MAP1LC3B
23434374
27898060
N/A
N/A
OmniPath
ZKSCAN3
WIPI2
23434374
27898060
N/A
N/A
OmniPath
Visualization