Gene Information gene info

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GENE：SVIP

GeneInfo:

GeneAttribute GeneDescription
GeneSymbol SVIP
FullNmae small VCP interacting protein
LocusType gene with protein product
Status Approved
HGNC_id HGNC:25238
EnsembleID ENSG00000198168
Uniprot Q8NHG7

Protein Structure:

Gene Description in Publicaton:

GeneSymbol CellDeathType PMID Description GeneType
SVIP mitotic_cd 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature
SVIP immunogenic 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature
SVIP autophagy 38538696 The 18 RCD signatures collected from previous studies. Supplementary Table of Figures.xlsx (https://github.com/zwxiangya/RCDscore) retulator signature
SVIP autophagy 36341760 The PCD-related genes contained the key regulatory genes of twelve PCD patterns which is mentioned above. Genes were collected from GSEA gene sets, KEGG, review articles, and manual collation [10]. The ultimate gene list was the concatenation regulatory genes of twelve PCD patterns. regulator signature

Go Annotation:

GeneSymbol Go id
SVIP GO:0000139,GO:0005515,GO:0005789,GO:0005789,GO:0005886,GO:0010508,GO:0010508,GO:0016020,GO:0030667,GO:0030868,GO:0031333,GO:0043621,GO:0051117,GO:0070062,GO:0070821,GO:1903061,GO:1903070,GO:1903070,GO:1904153,GO:1904153,GO:1904240

KEGG Annotation:

GeneSymbol GeneID Pathway Pathway Name
SVIP hsa:258010 path:hsa04141 Protein processing in endoplasmic reticulum - Homo sapiens (human)

Protein-Protein Interaction(String):

Signalink 3.0 modificators

Source Target Pmid Interactiontype Methods Database
ETS1 SVIP 18971253 20019798 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
PRDM14 SVIP 18971253 20953172 trascriptional regulation,stimulation inferred by curator,chromatin immunoprecipitation assay TFlink
SMARCA4 SVIP 18971253 trascriptional regulation,stimulation inferred by curator TFlink
CTCF SVIP 18971253 trascriptional regulation,stimulation inferred by curator TFlink
FOXA1 SVIP 18971253 trascriptional regulation,stimulation inferred by curator TFlink
GATA2 SVIP 18971253 trascriptional regulation,stimulation inferred by curator TFlink
HNF4A SVIP 18971253 trascriptional regulation,stimulation inferred by curator TFlink
RUNX1 SVIP 18971253 trascriptional regulation,stimulation inferred by curator TFlink
TRIM28 SVIP 18971253 trascriptional regulation,stimulation inferred by curator TFlink
TAL1 SVIP 18971253 trascriptional regulation,stimulation inferred by curator TFlink

Source Target Pmid Interactiontype Methods Database
URS00004719AB SVIP 20371350 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS0000202460 SVIP 20371350 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00002233F4 SVIP 20371350 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS0000272039 SVIP 20371350 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS0000427B68 SVIP 20371350 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS000075B538 SVIP 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS0000365675 SVIP 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS00001FC26E SVIP 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS0000160683 SVIP 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS000075C4B1 SVIP 23824327 25416803 mrna cleavage,inhibition clip TarBase
URS00001EFEC1 SVIP 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS0000285DCB SVIP 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS000028DE3F SVIP 21572407 25416803 mrna cleavage,inhibition clip TarBase
URS00002A71AD SVIP 21572407 25416803 mrna cleavage,inhibition clip TarBase

Source Target Pmid Interactiontype Methods Database
AMFR SVIP 25361965 interaction type N/A PTMCode2
SVIP AMFR 25361965 interaction type N/A PTMCode2
CANX SVIP 25361965 interaction type N/A PTMCode2
SVIP CANX 25361965 interaction type N/A PTMCode2

Source Target Pmid Interactiontype Methods Database
HOXB5 SVIP 25348397 N/A physical interaction ComPPI
TFRC SVIP 25348397 N/A physical interaction ComPPI
GOLGA1 SVIP 25348397 N/A physical interaction ComPPI
VCP SVIP 12529442 17872946 21909394 21914798 24100225 25348397 27898060 N/A physical interaction ComPPI,OmniPath
CANX SVIP 25348397 N/A physical interaction ComPPI
DMC1 SVIP 25348397 N/A physical interaction ComPPI
SYVN1 SVIP 25348397 N/A physical interaction ComPPI
ATP6V1B1 SVIP 25348397 N/A physical interaction ComPPI
DUSP22 SVIP 25348397 N/A physical interaction ComPPI
AMFR SVIP 25348397 N/A physical interaction ComPPI
SELENOS SVIP 25348397 N/A physical interaction ComPPI
DERL1 SVIP 25348397 N/A physical interaction ComPPI
VCPIP1 SVIP 19615732 24234451 25348397 physical association anti tag coimmunoprecipitation,physical interaction ComPPI,IntAct
NPLOC4 SVIP 25348397 N/A physical interaction ComPPI
UFD1 SVIP 25348397 N/A physical interaction ComPPI
MGST3 SVIP 25348397 N/A physical interaction ComPPI
UBXN6 SVIP 24234451 25348397 physical association two hybrid,two hybrid array,two hybrid prey pooling approach ComPPI,IntAct
LAMP1 SVIP 25348397 N/A physical interaction ComPPI
SVIP TMEM185A 25348397 N/A physical interaction ComPPI
SVIP GJB7 25348397 N/A physical interaction ComPPI
SVIP CPA5 25348397 N/A physical interaction ComPPI
SVIP SLC16A14 25348397 N/A physical interaction ComPPI

Source Target Pmid Interactiontype Methods Database
URS00009B4133 SVIP 27087310 direct interaction,inhibition N/A NPInter

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