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Visualization
Browser View of Super-Enhancers on Mouse Dec. 2011 (GRCm38/mm10) Assembly
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H3K27ac across cell-types/tissues
BoneMarrow
bone marrow macrophage
breast epithelium
brown adipose tissue
Cerebellum
CH12.LX
Cortex
embryonic facial prominence
embryonic fibroblast
ES-Bruce4
ES-E14
forebrain
heart
hidbrain
intestine
kidney
limb
liver
lung
MEL cell line
midbrain
neural tube
Olfact Bulb
Placenta
small intestine
Spleen
stomach
Testis
Thymus
WholeBrain
p300 across cell-types/tissues
CH12.LX
ES-Bruce4
heart
liver 0
liver 14.5
lung
MEL cell line
stomach
DNA Methylation
WGBS from embryonic facial prominence
MEF_RRBS_MspI
heart
WGBS from forebrain
WGBS from hindbrain
WGBS from intestine
WGBS from kidney
WGBS from limb
WGBS from liver
WGBS from lung
WGBS from midbrain
WGBS from neural tube
mouse_placenta
Small-Intestine_8W-BS-rep1
WGBS from neural tube
Expression
LFD BAT 1
total RNA-seq from embryonic facial prominence
polyA mRNA RNA-seq from ES-Bruce4
total RNA-seq from ES-E14
total RNA-seq from forebrain
total RNA-seq from hindbrain
total RNA-seq from intestine
single cell RNA-seq from liver
total RNA-seq from liver
total RNA-seq from lung
polyA mRNA RNA-seq from MEL cell line
total RNA-seq from midbrain
total RNA-seq from neural tube
total RNA-seq from stomach
TFBS by ChIP-seq
CH12_CTCF
CH12_Max
CH12_p300_SC-584
ES-E14_HCFC1_P
ES-E14_ZNF384_P
MEL_CTCF
MEL_GATA-1
MEL_Max
MEL_p300
Conservation
conservation score
4DGenome
"3C, 4C, 5C, ChIA-PET, Hi-C, Capture-C and IM-PET"
SpCas9 Target Site
Seed sequence for SpCas9 target site
Genomes
Genomes Selection
Human Dec. 2013
(GRCh38/hg38)
Mouse Dec. 2011
(GRCm38/mm10)
D. melanogaster Aug. 2014
(BDGP Release 6 + ISO1 MT/dm6)
C. elegans Oct. 2010
(WS220/ce10)
Zebrafish May 2017
(GRCz11/danRer11)
Chicken Dec 2015
(Gallus_gallus-5.0/galGal5)
Chimp May 2016
(Pan_tro 3.0/panTro5)
Rhesus Nov. 2015
(BCM Mmul_8.0.1/rheMac8)
Sheep Aug. 2012
(ISGC Oar_v3.1/oviAri3)
X.tropicalis Jul. 2016
(Xenopus_tropicalis_v9.1/xenTro9)
Stickleback Feb. 2006
(Broad/gasAcu1)